Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00095 ATGGCGGCGTCGATTTCCGCACCACCGATGGTTCCGCCCAATGGTCCTCCGAGGCCGGTTTCGCCTGCGGCAGCGGCATTGTCTTCGGGACCGTTTGCAAATTTGTCATTGTACGTCGGTGATCTTCACCCGGATGTGGATGAACGGCAGCTCGTTGATCTGTTCAGCCAAGTGGCGACTGTTGTCTCCACCAGGGTTTGCAGAGATCAGACTAGGCAATGCTCTCTCGGTTACGGCTACGTCAACTTTGGCTCCGCCCAGGATGCTGCTAATGCCATAGAAATTTTGAATTTTTCTCCCATGAATGGAAAACCCATTCGGATCATGTTCTCTCATAGAGATCCTAGCATTCGGAAAAGTGGATATGCAAATGTCTTTATTAAGAACTTGGACGCATCAATAGATAACAAGGCATTACATGAAACTTTTTCTGCCTTTGGAACTGTACTTTCCTGCAAGGTAGCTGTTGACGCCTTTGGCCAGACGAAAGGGTACGGTTTCGTACAGTATGACAATGAAGAATCAGCGCAAAATGCCATCAAACAATTGAATGGGATGTTGTTAAATGAAAAACAAGTCTACGTTGGACTCTTTGTTCGGCGCATGGAAAGGACTCGTGCAAATGGATTGCCAAAGTTTACTAATGTTTATGTGAAAAATTTCTCTGAAACTTATACTGATGAGGACCTCAAACAGCTTTTTGAGTCATATGGCACAATAACTAGTGCAGTCATCATGAAAGATGCAAACAGCAAGTCTCGATGTTTTGGCTTTGTTAATTTCCAAAGCCCAGAATCAGCAGCTGCTGCAGTTGAGAGGTTAAATGGAACCACTATCAATGGTGACAAGATATTATATGTAGGGAGAGCTCAGAAGAAAGCAGAAAGAGAGGCAGAATTGAAGGCCAAATTTGAGCAAGAAAGAATTAGTCGATATGAGAAATTACAAGGTGCTAACTTGTACATGAAAAATCTCGATGATAGCATCGATGATGAAAAACTGAAGGAGCTATTTTCTGAGTTTGGAACTATTACATCATGCAAGGTTATGCTTGATTCACAAGGGAATAGTAAGGGTTCTGGTTTTGTGGCCTTTTCTACACCTGAGGATGCAAGTAAAGCTTTGAATGAAATGAATGGGAAAATGGTAGCTGGAAAACCTCTTTATGTTGCTGTGGCCCAGCGGAAAGAAGAGAGGAAGGCCTTACAGGCTCGTTATGCTCAATTCCGTTCACCTGGGAGGATGGGGCCTCTGCCTACTGGAATTCCTGGATATCATCCTGGGGCACCTAGATTTGCCCCCCAGCAGTTGTACTTTGGTCAAGGAACACCTGGTCTGATACCACCTCAGCCATCCGGATTTGGTTTCCAGCCACAACTATTGCCTGGAATGCGTCCCGGTGTTGCTCCAAATTACGTTATGCAATACCAGCTTCCGAGACAAATTCAGCCTGGGCAAAGGATGGGTGTTCGACGAGGTGGAAACTTCCAACATATGCAGCAGAACCAGATGCTGCAACGGAACTCCAATCAAGGGTTTAGATATATGGGCAATAATCGAAATAGCATGGACCCATCTATGGTTCTACAAGGCCTGGTGAATCCAATGACGCCTTTACCCTTTGATGCTTCTTCTGGGGTTACTTCAGCTCCAGTTGATAATCTGCGACCTGGTTCGCTTTCTACAACACTTGCCTCAGCTTTGGCCTCTGCTTCACCAGAAAATCAGCGCATGATGCTGGGTGAACAATTATATCCCCTGGTAGAGCGTCTTGCGCCAAGCCATGCATCAAAAGTGACGGGGATGTTGCTGGAAATGGACCAATCCGAGGTTATCCATCTCATGGAATCTCCTGAAGACTTGAAAATAAAGGTTTCTGAGGCAATGCAAGTCCTGCATGAAGCTGCATCGGGCAGTGAAGTTGGCGAACAGCTTGTCTCACTGTCCCTGAATGAATGA 1959 0.4564 MAASISAPPMVPPNGPPRPVSPAAAALSSGPFANLSLYVGDLHPDVDERQLVDLFSQVATVVSTRVCRDQTRQCSLGYGYVNFGSAQDAANAIEILNFSPMNGKPIRIMFSHRDPSIRKSGYANVFIKNLDASIDNKALHETFSAFGTVLSCKVAVDAFGQTKGYGFVQYDNEESAQNAIKQLNGMLLNEKQVYVGLFVRRMERTRANGLPKFTNVYVKNFSETYTDEDLKQLFESYGTITSAVIMKDANSKSRCFGFVNFQSPESAAAAVERLNGTTINGDKILYVGRAQKKAEREAELKAKFEQERISRYEKLQGANLYMKNLDDSIDDEKLKELFSEFGTITSCKVMLDSQGNSKGSGFVAFSTPEDASKALNEMNGKMVAGKPLYVAVAQRKEERKALQARYAQFRSPGRMGPLPTGIPGYHPGAPRFAPQQLYFGQGTPGLIPPQPSGFGFQPQLLPGMRPGVAPNYVMQYQLPRQIQPGQRMGVRRGGNFQHMQQNQMLQRNSNQGFRYMGNNRNSMDPSMVLQGLVNPMTPLPFDASSGVTSAPVDNLRPGSLSTTLASALASASPENQRMMLGEQLYPLVERLAPSHASKVTGMLLEMDQSEVIHLMESPEDLKIKVSEAMQVLHEAASGSEVGEQLVSLSLNE 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00095 652 Gene3D - 28 117 IPR012677 -
Accr18g00095 652 CDD RRM3_I_PABPs 213 293 - -
Accr18g00095 652 SUPERFAMILY PABC (PABP) domain 497 636 IPR036053 GO:0003723
Accr18g00095 652 FunFam Polyadenylate-binding protein 557 638 - -
Accr18g00095 652 Gene3D - 200 302 IPR012677 -
Accr18g00095 652 Gene3D - 303 408 IPR012677 -
Accr18g00095 652 CDD RRM4_I_PABPs 317 395 - -
Accr18g00095 652 Gene3D - 559 637 - -
Accr18g00095 652 FunFam Polyadenylate-binding protein 301 405 - -
Accr18g00095 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Accr18g00095 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 284 IPR000504 GO:0003723
Accr18g00095 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 388 IPR000504 GO:0003723
Accr18g00095 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Accr18g00095 652 SMART poly_2 572 635 IPR002004 GO:0003723
Accr18g00095 652 FunFam Polyadenylate-binding protein 124 197 - -
Accr18g00095 652 SMART rrm2_1 124 196 IPR003954 GO:0003676
Accr18g00095 652 SMART rrm2_1 215 287 IPR003954 GO:0003676
Accr18g00095 652 SMART rrm2_1 319 391 IPR003954 GO:0003676
Accr18g00095 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Accr18g00095 652 SUPERFAMILY RNA-binding domain, RBD 35 200 IPR035979 GO:0003676
Accr18g00095 652 MobiDBLite consensus disorder prediction 1 23 - -
Accr18g00095 652 Pfam Poly-adenylate binding protein, unique domain 568 632 IPR002004 GO:0003723
Accr18g00095 652 Coils Coil 287 315 - -
Accr18g00095 652 FunFam Polyadenylate-binding protein 204 300 - -
Accr18g00095 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723
Accr18g00095 652 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 560 637 IPR002004 GO:0003723
Accr18g00095 652 Gene3D - 122 197 IPR012677 -
Accr18g00095 652 CDD RRM2_I_PABPs 121 196 IPR045305 -
Accr18g00095 652 SMART rrm1_1 36 109 IPR000504 GO:0003723
Accr18g00095 652 SMART rrm1_1 319 391 IPR000504 GO:0003723
Accr18g00095 652 SMART rrm1_1 124 196 IPR000504 GO:0003723
Accr18g00095 652 SMART rrm1_1 215 288 IPR000504 GO:0003723
Accr18g00095 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Accr18g00095 652 SUPERFAMILY RNA-binding domain, RBD 213 398 IPR035979 GO:0003676
Accr18g00095 652 PANTHER RNA BINDING PROTEIN 36 97 - -
Accr18g00095 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 200 IPR000504 GO:0003723
Accr18g00095 652 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 36 632 IPR006515 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00095 34 641 Eukaryotic Initiation Factors Gene Family AT1G71770 58.065 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr18g00095 K13126 - gmx:100783163 975.311