Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00094 ATGGACATGGCGGCGTCGATTTCCGCACCACCGATGGTTCCGCCCAATGGTCCTCCGAGGCCGGTTTCGCCTGCGGCAGCGGCATTGTCTTCGGGACCGTTTGCAAATTTGTCATTGTACGTCGGTGATCTTCACCCGGATGTGGATGAACGGCAGCTCGTTGATCTGTTCAGCCAAGTGGCGACTGTTGTCTCCACCAGGGTTTGCAGAGATCAGACTAGGCAATGCTCTCTCGGTTACGGCTACGTCAACTTTGGCTCCGCCCAGGATGCTGCTAATGCCATAGAAATTTTGAATTTTTCTCCCATGAATGGAAAACCCATTCGGATCATGTTCTCTCATAGAGATCCTAGCATTCGGAAAAGTGGATATGCAAATGTCTTTATTAAGAACTTGGACGCATCAATAGATAACAAGGCATTACATGAAACTTTTTCTGCCTTTGGAACTGTACTTTCCTGCAAGGTAGCTGTTGACGCCTTTGGCCAGACGAAAGGGTACGGTTTCGTACAGTATGACAATGAAGAATCAGCGCAAAATGCCATCAAACAATTGAATGGGATGTTGTTAAATGAAAAACAAGTCTACGTTGGACTCTTTGTTCGGCGCATGGAAAGGACTCGTGCAAATGGATTGCCAAAGTTTACTAATGTTTATGTGAAAAATTTCTCTGAAACTTATACTGATGAGGACCTCAAACAGCTTTTTGAGTCATATGGCACAATAACTAGTGCAGTCATCATGAAAGATGCAAACAGCAAGTCTCGATGTTTTGGCTTTGTTAATTTCCAAAGCCCAGAATCAGCAGCTGCTGCAGTTGAGAGGTTAAATGGAACCACTATCAATGGTGACAAGATATTATATGTAGGGAGAGCTCAGAAGAAAGCAGAAAGAGAGGCAGAATTGAAGGCCAAATTTGAGCAAGAAAGAATTAGTCGATATGAGAAATTACAAGGTGCTAACTTGTACATGAAAAATCTCGATGATAGCATCGATGATGAAAAACTGAAGGAGCTATTTTCTGAGTTTGGAACTATTACATCATGCAAGGTTATGCTTGATTCACAAGGGAATAGTAAGGGTTCTGGTTTTGTGGCCTTTTCTACACCTGAGGATGCAAGTAAAGCTTTGAATGAAATGAATGGGAAAATGGTAGCTGGAAAACCTCTTTATGTTGCTGTGGCCCAGCGGAAAGAAGAGAGGAAGGCCTTACAGGCTCGTTATGCTCAATTCCGTTCACCTGGGAGGATGGGGCCTCTGCCTACTGGAATTCCTGGATATCATCCTGGGGCACCTAGATTTGCCCCCCAGCAGTTGTACTTTGGTCAAGGAACACCTGGTCTGATACCACCTCAGCCATCCGGATTTGGTTTCCAGCCACAACTATTGCCTGGAATGCGTCCCGGTGTTGCTCCAAATTACGTTATGCAATACCAGCTTCCGAGACAAATTCAGCCTGGGCAAAGGATGGGTGTTCGACGAGGTGGAAACTTCCAACATATGCAGCAGAACCAGATGCTGCAACGGAACTCCAATCAAGGGTTTAGATATATGGGCAATAATCGAAATAGCATGGACCCATCTATGGTTCTACAAGGCCTGGTGAATCCAATGACGCCTTTACCCTTTGATGCTTCTTCTGGGGTTACTTCAGCTCCAGTTGATAATCTGCGACCTGGTTCGCTTTCTACAACACTTGCCTCAGCTTTGGCCTCTGCTTCACCAGAAAATCAGCGCATGATGCTGGGTGAACAATTATATCCCCTGGTAGAGCGTCTTGCGCCAAGCCATGCATCAAAAGTGACGGGGATGTTGCTGGAAATGGACCAATCCGAGGTTATCCATCTCATGGAATCTCCTGAAGACTTGAAAATAAAGGTTTCTGAGGCAATGCAAGTCCTGCATGAAGCTGCATCGGGCAGTGAAGTTGGCGAACAGCTTGTCTCACTGTCCCTGAATGAATGA 1965 0.4565 MDMAASISAPPMVPPNGPPRPVSPAAAALSSGPFANLSLYVGDLHPDVDERQLVDLFSQVATVVSTRVCRDQTRQCSLGYGYVNFGSAQDAANAIEILNFSPMNGKPIRIMFSHRDPSIRKSGYANVFIKNLDASIDNKALHETFSAFGTVLSCKVAVDAFGQTKGYGFVQYDNEESAQNAIKQLNGMLLNEKQVYVGLFVRRMERTRANGLPKFTNVYVKNFSETYTDEDLKQLFESYGTITSAVIMKDANSKSRCFGFVNFQSPESAAAAVERLNGTTINGDKILYVGRAQKKAEREAELKAKFEQERISRYEKLQGANLYMKNLDDSIDDEKLKELFSEFGTITSCKVMLDSQGNSKGSGFVAFSTPEDASKALNEMNGKMVAGKPLYVAVAQRKEERKALQARYAQFRSPGRMGPLPTGIPGYHPGAPRFAPQQLYFGQGTPGLIPPQPSGFGFQPQLLPGMRPGVAPNYVMQYQLPRQIQPGQRMGVRRGGNFQHMQQNQMLQRNSNQGFRYMGNNRNSMDPSMVLQGLVNPMTPLPFDASSGVTSAPVDNLRPGSLSTTLASALASASPENQRMMLGEQLYPLVERLAPSHASKVTGMLLEMDQSEVIHLMESPEDLKIKVSEAMQVLHEAASGSEVGEQLVSLSLNE 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00094 654 CDD RRM2_I_PABPs 123 198 IPR045305 -
Accr18g00094 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Accr18g00094 654 FunFam Polyadenylate-binding protein 206 302 - -
Accr18g00094 654 Gene3D - 561 639 - -
Accr18g00094 654 SMART rrm2_1 126 198 IPR003954 GO:0003676
Accr18g00094 654 SMART rrm2_1 217 289 IPR003954 GO:0003676
Accr18g00094 654 SMART rrm2_1 321 393 IPR003954 GO:0003676
Accr18g00094 654 Gene3D - 30 119 IPR012677 -
Accr18g00094 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 202 IPR000504 GO:0003723
Accr18g00094 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 294 IPR000504 GO:0003723
Accr18g00094 654 SMART poly_2 574 637 IPR002004 GO:0003723
Accr18g00094 654 SUPERFAMILY RNA-binding domain, RBD 37 202 IPR035979 GO:0003676
Accr18g00094 654 Coils Coil 289 317 - -
Accr18g00094 654 FunFam Polyadenylate-binding protein 303 407 - -
Accr18g00094 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 320 397 IPR000504 GO:0003723
Accr18g00094 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 562 639 IPR002004 GO:0003723
Accr18g00094 654 Pfam Poly-adenylate binding protein, unique domain 570 634 IPR002004 GO:0003723
Accr18g00094 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 322 390 IPR000504 GO:0003723
Accr18g00094 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 286 IPR000504 GO:0003723
Accr18g00094 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 195 IPR000504 GO:0003723
Accr18g00094 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 109 IPR000504 GO:0003723
Accr18g00094 654 CDD RRM4_I_PABPs 319 397 - -
Accr18g00094 654 SMART rrm1_1 38 111 IPR000504 GO:0003723
Accr18g00094 654 SMART rrm1_1 126 198 IPR000504 GO:0003723
Accr18g00094 654 SMART rrm1_1 321 393 IPR000504 GO:0003723
Accr18g00094 654 SMART rrm1_1 217 290 IPR000504 GO:0003723
Accr18g00094 654 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 38 634 IPR006515 GO:0003723
Accr18g00094 654 Gene3D - 124 199 IPR012677 -
Accr18g00094 654 Gene3D - 305 410 IPR012677 -
Accr18g00094 654 Gene3D - 201 304 IPR012677 -
Accr18g00094 654 PANTHER RNA BINDING PROTEIN 38 99 - -
Accr18g00094 654 SUPERFAMILY PABC (PABP) domain 499 638 IPR036053 GO:0003723
Accr18g00094 654 FunFam Polyadenylate-binding protein 559 640 - -
Accr18g00094 654 SUPERFAMILY RNA-binding domain, RBD 215 400 IPR035979 GO:0003676
Accr18g00094 654 CDD RRM3_I_PABPs 215 295 - -
Accr18g00094 654 MobiDBLite consensus disorder prediction 1 25 - -
Accr18g00094 654 FunFam Polyadenylate-binding protein 126 199 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00094 36 643 Eukaryotic Initiation Factors Gene Family AT1G71770 58.065 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr18g00094 K13126 - gmx:100783163 975.311