Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00088 ATGGATATCAGCAATGATTCTATATCAAGTAAGCATCGCAAGCCTCATGATTCATTATCTGTTTCTCCATCACAAACTTCTCCAAAGTCACCCAAACCCTCTGGCTCTCCAAGGTCCCCTAGGTCTCCAAATTCCCCAAGGTTACCTGGCCATAGTACAAAGAATGAAAGGCAATCACGTTCGCCAAGAGATGGACGACCAAAGAAAGGAGGTTGCGGAGGGAAAGGCACGTGGGGAGGATTGCTTGATACGGAAGACATGGACTTTCTTGACCCTCATGATCCGAACTATGACAGCACTGAGGAAAAAGAACCTCCAACTGAAAACAAAAAGAAAGGGGAGTTAGAAGAGTACAAGAGGAAAGCTATAATAATAGTGGAGGAATATTTTACCACTGATGATATTTTTGCTGTGAAAAATGAACTGAAGTTACTTGGGGCACCATACTTCAGCTACTATTTTATCAAAAAGCTTGTCTCAGTGTCAATGGACAGACATGACAAAGAAAAAGAAATGGCTGCTGTTTTGCTATCTGCACTATATGCCGACACATTTGATCCTTCTCAAGTTTACAAGGGCTTCAGCAAACTAGTTGAATCTGCGGATGACCTGATTGTGGACATACCTGACGCGGTTGATGTTCTAGCGCTTTTCTTGGCTCGAGCCGTGGTTGATGACATACTTCCTCCTGCATTTTTGAAGAGACAGATGGCTTACTTACCGAAGGACTCGAAAGGGGTTGAGGTCTTGAAGAAGGCGGAGAAAAACTACCTCTCAGCCCCTCTACATGCTGAAATTATAGAGCGCCGGTGGGGAGGAAGTAAGAACATGACAGTTGATGATGTCAAGGCTAGAATAAACAATTTATTGGTAGAATACGTAACAAGTGGTGACAAGAAAGAAGCTTTTAGATGCATTAAGGATTTGAAAGTTCCATTCTATCACCATGAGATAGTGAAAAGGGCTCTAATAATGGCAATGGAGAGGCGCCAAGCAGAAGGTCCTCTGCTAGATCTCTTGAAAGAAGCAGGTGAAGAAGGCTTCATCAACTCCAGCCAAACCTCAAAGGGCTTTGATCGGTTGATTGACACGGTTGATGACTTATCACTCGACATACCAAACGCGCGTGAAATACTCCAAAATTTAATGTCCAAGGCAGCATCTGATGGTTGGATATGTGTTTCATCTTTAAAATCACTCTCACTGGAGCCGAAAAAGGAGTCACTAGAAGAAAGTGCAGCCAGAAATTTCAAGGTAAAGGCTCAATCCATAATTCAAGAGTACTTCTTGTCAGGTGACATATTTGAAGTTATTAGTTGTCTTGAGCAAGAGAACAAAACTTGCTCTCCACACCTCAATGCAATATTTGTCAAGAGGCTTATAACTTTAGCCATGGACCGAAAGAAGCGCGAGAAGGAAATGGCCTCGGTTCTGCTTTCATCTCTGTGTTTCCCAGCTGATGATGTAGTGAATGGTTTTGTCATGTTGATAGAATCAGCAGATGACACTGCCCTCGACAATCCAGTGGTAGTGGAGGATCTTGCCATGTTCCTGGCCAGAGCAGTAGTGGATGAAGTCATGGCCCCACAACATCTAGAAGAGATTGGAACACAATGTGTGGGACCAGATTCAATAGGAAGTAAAGTGCTTCAAATGGCAAAGTCATTGCTCAAAGCTAGGCTTTCAGGGGAGAGAATATTAAGGTGTTGGGGTGGAGGAGGAAGCAGCAAAAGCGGGTGGGAAATTGAGGATGTTAAGGGCAAGATTATAAATCTTTTGGAGGAGTATGAATCCGGGGGCGACATAAGGGAGGCGTGTCGGTGCATGAAAGAACTTGGTATGCCATTTTTCCACCATGAGGTTGTGAAGAAAGCTCTGGTGAAAATTATTGAGAAGAAGAATGATAGGTTGTGGGGTCTACTCAAGGAATGTTTTGAATCTGGACTGATAACAATGAACCAGATGATGAAGGGGTTTGGAAGGCTTGCAGAATCTCTTGATGACTTGGCTTTGGATGTTCCTGATGCCAAGAAACAGTTTATACACTATGTAGAACTAGCAAAGGGTTCAGAGTGGTTGGATTCTTCATTTAGTCTCAGCAAATTTGAACATTCCACAGAGAATGGAACCTGCTAA 2136 0.4321 MDISNDSISSKHRKPHDSLSVSPSQTSPKSPKPSGSPRSPRSPNSPRLPGHSTKNERQSRSPRDGRPKKGGCGGKGTWGGLLDTEDMDFLDPHDPNYDSTEEKEPPTENKKKGELEEYKRKAIIIVEEYFTTDDIFAVKNELKLLGAPYFSYYFIKKLVSVSMDRHDKEKEMAAVLLSALYADTFDPSQVYKGFSKLVESADDLIVDIPDAVDVLALFLARAVVDDILPPAFLKRQMAYLPKDSKGVEVLKKAEKNYLSAPLHAEIIERRWGGSKNMTVDDVKARINNLLVEYVTSGDKKEAFRCIKDLKVPFYHHEIVKRALIMAMERRQAEGPLLDLLKEAGEEGFINSSQTSKGFDRLIDTVDDLSLDIPNAREILQNLMSKAASDGWICVSSLKSLSLEPKKESLEESAARNFKVKAQSIIQEYFLSGDIFEVISCLEQENKTCSPHLNAIFVKRLITLAMDRKKREKEMASVLLSSLCFPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVMAPQHLEEIGTQCVGPDSIGSKVLQMAKSLLKARLSGERILRCWGGGGSSKSGWEIEDVKGKIINLLEEYESGGDIREACRCMKELGMPFFHHEVVKKALVKIIEKKNDRLWGLLKECFESGLITMNQMMKGFGRLAESLDDLALDVPDAKKQFIHYVELAKGSEWLDSSFSLSKFEHSTENGTC 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00088 711 Gene3D - 568 700 - -
Accr18g00088 711 Gene3D - 268 400 - -
Accr18g00088 711 ProSiteProfiles MI domain profile. 117 238 IPR003891 -
Accr18g00088 711 SUPERFAMILY ARM repeat 114 275 IPR016024 -
Accr18g00088 711 SMART ma3_7 585 694 IPR003891 -
Accr18g00088 711 SMART ma3_7 417 528 IPR003891 -
Accr18g00088 711 SMART ma3_7 282 393 IPR003891 -
Accr18g00088 711 SMART ma3_7 118 229 IPR003891 -
Accr18g00088 711 PANTHER PROGRAMMED CELL DEATH 4 20 697 IPR039778 GO:0045892
Accr18g00088 711 ProSiteProfiles MI domain profile. 281 402 IPR003891 -
Accr18g00088 711 FunFam programmed cell death protein 4 406 561 - -
Accr18g00088 711 Gene3D - 106 258 - -
Accr18g00088 711 Gene3D - 402 560 - -
Accr18g00088 711 MobiDBLite consensus disorder prediction 86 114 - -
Accr18g00088 711 Pfam MA3 domain 586 693 IPR003891 -
Accr18g00088 711 Pfam MA3 domain 418 527 IPR003891 -
Accr18g00088 711 Pfam MA3 domain 283 392 IPR003891 -
Accr18g00088 711 Pfam MA3 domain 119 229 IPR003891 -
Accr18g00088 711 ProSiteProfiles MI domain profile. 584 703 IPR003891 -
Accr18g00088 711 MobiDBLite consensus disorder prediction 1 114 - -
Accr18g00088 711 MobiDBLite consensus disorder prediction 1 18 - -
Accr18g00088 711 SUPERFAMILY ARM repeat 277 398 IPR016024 -
Accr18g00088 711 FunFam programmed cell death protein 4 107 260 - -
Accr18g00088 711 SUPERFAMILY ARM repeat 581 698 IPR016024 -
Accr18g00088 711 SUPERFAMILY ARM repeat 414 575 IPR016024 -
Accr18g00088 711 ProSiteProfiles MI domain profile. 416 537 IPR003891 -
Accr18g00088 711 MobiDBLite consensus disorder prediction 53 70 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00088 588 680 Eukaryotic Initiation Factors Gene Family AT4G30680 31.250 2.64e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr18g00088 - - pcin:129295573 1186.79