Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00050 ATGATCTCACTCTCCCGGCTTCTTAATGGAACCGACTTAACTGATTCATGGAACATCGTCACAAAGCCAAATCCATGTGGATGGAAAGGAGTTGCTTGCGATCAGACCAATTCCTCTGTGATCAAATTTCTTCTATCTCGACATTCCATCTCTTCCTCTGAATTCCTGACTCTTCTCTGCCAAATTGAAAGCTTGCAGCATCTTGATCTTTCTGGTAACAGCATTAGCTCAATTCCAGACGATTTCATCACTGATTGTGGAAAGGTTGCGGGGTTGAAGTTGCTTAATTTCAGTTCTAACAACATATGGGGTCCCTTGCCTACTTTTCGTGGATTTGATGGGCTAGAATCCCTGGATATGTCTTTCAATCACTTTTCTGGAAAAGTTGATTCTGAGTTAGCTGAATTAGCCAGCCTCAAGAGCTTAAATCTTAGTTTCAATTCTTTCAATGGGCCCCTTCCTACCAAACTGGGAAATTCCGCCAATTTGGAGCAGCTTGAGTTAAGTAATAATCATTTTGTAGGAAAAATCCCTGCTGAAATCCAGAGTTACACAAATTTGACTGTGCTTGATCTTAGAACAAATAACATTTCAGGGTCTATTCCTGGCAACATAGGAGATCTGTCCAGATTGGAAACTTTGATTCTGTCCTCTAATCAACTCGGAGGGGAAGTCCCAAGTGCACTCTCGAACATCAAAACCCTTGTCCGTTTTGCAGCCAATCAAAACGAATTTAATGGTTCTGTTCCCAGCGGAATCACAAGATTTCTCAAGAACTTGGATCTCAGTTATAATATGTTATCCGGGCCTATTCCAGCGGGCCTTCTTTCACAATTAAATCTGGTGTCTGTGGATTTGTCCAATAACTCGTTATCTGGGCCTTTACCTGCAGACATATCTTCTAGCATTGTCAGGTTGAGATTAGGGGGCAATTCTCTAAATGGGACGATATCTCCAAAGCCATTTGCCACAGGTCAGAATTTGATGTATGTCGAACTCGAAGCCAATAACTTGACGGGCCAAATACCTTCTGAGGTGGGTTCTTGCCAGAACTTAGCCTTGTTAAACTTGGCTCAGAATCAGCTATCTGGTGAATTGCCTGCAGAGCTTGGCAAGCTTAAAAATCTTCAAGTCTTGCAGCTTCAAGGGAATAAGCTTTCTGGACAAATACCAACTCAAGTGTCTCAACTAAAGAAGCTGTTGACGCTGAATTTGAGCGACAATTCTCTGAATGGAACCATTCCGCAAGCAATGTTCAATTTGGTAACGCTTAGTAAGCTTTACTTACAGCAAAACAAACTGAGTGGTTCTATTCCCACATCTATAATTGGCATGGAGTCTCTTATTGAACTTCAACTTGGAGAAAACCAGCTAAGTGGTTCGATTCCAAAAATGCCAGTGAGTCTTCAGATTGCCTTGAATCTCAGCAGAAATCTCTTTGCGGGGCCTATTCCTAGCATTCTTGATGGATTGAATAACCTGGAAATCTTGGATCTCTCAAATAACAAATTTGATGGTAAAATTCCTGATTTTCTCACCAGCATGCCGGCTTTGACACAGTTGCAACTTTCTAATAATTCGCTGTCTGGTGTCATTCCCGACTTTAATTCTCATGTTAAAGTTGATTTGGGTGGAAATAATGGTCTCGTAAACAAAACTGGAACTCCCAACACTTCTCCAAGATCTCCAAAGGGAAGTCCTGTTGTCATGGCAGTTCTTGTTGCAATTGCAGCTGCAGTTTTTCTGGTTGGCCTGGTCACTGTGCTGGCTGTATTAATCTCCCGACGCCTATACAAGGTAAATGACGAACACTTGCAGCCATATGAAGACCCTCAACCCCCTCAGGTCATCCAAGGTAACTTATTAACTCCCAACGGAATTCACAGATCCAACATTGATTTCTCTAAGGCCATGAAAGATGTTGCTGAAACATCAAACGTTACTCTGAAAACGAGGTTTTCAACTTATTACAAGACTATTATGCCATCTGGATCAATCTACTTTGTCAAGAAGCTTAACTGGAGTGAGAAGCTATTCCCACTGGGCAGCCATGATAAATTTGGTAAAGAGCTAGAGGTCTTGGCAAAATTGAACAATTCAAATGTCATGACTCCTTTGGCTTATGTTCTGTCCACTGACAGCGCTTACATACTGTATGAATTTATCTCAAATGGCTCCCTATATGATGCTCTTCATGGAAGCTTGCGAAACTCTTTAGATTGGGCTAGCAGATATAGTATAGCTGTTGGGGCGGCTCAAGGTCTCTCTTTTCTGCATGGATTTACCTCAGGTCCAATTCTTCTCCTTGACCTATCAAGTAAAAGTATAATGCTGAAGTCCCTCAAGGAGCCTCTAGTTGGAGATATTGAACTCTACAAGGTGACTGATCCTTCAAAGAGTACAGGAAGTTTTTCTGCAGTTGCTGGTTCTGTTGGCTATATTCCTCCAGAGTATGCATACACAATGAGAGTGACAATGGCTGGGAATGTGTACAGTTTTGGGGTGATCCTGCTTGAATTGTTGACGGGAAAGCCAGCAGTGACTGATGGGACTGAATTGGTGAAGTGGGTGATGCGCAACTCGGTGAAGCAAGAACACATTCTGGATTTTAGTGTCAGTAAAACATCTCAGGCTGTCAAAACCCAGATGCTTGCCATTCTTCAGGTAGCTCTTGCCTGTGTCAGTTCATCCCCTGAAGCAAGACCAAAGATGAAGAGTGTGCTCCGGATGCTCCTGAATGCACGATAA 2748 0.4243 MISLSRLLNGTDLTDSWNIVTKPNPCGWKGVACDQTNSSVIKFLLSRHSISSSEFLTLLCQIESLQHLDLSGNSISSIPDDFITDCGKVAGLKLLNFSSNNIWGPLPTFRGFDGLESLDMSFNHFSGKVDSELAELASLKSLNLSFNSFNGPLPTKLGNSANLEQLELSNNHFVGKIPAEIQSYTNLTVLDLRTNNISGSIPGNIGDLSRLETLILSSNQLGGEVPSALSNIKTLVRFAANQNEFNGSVPSGITRFLKNLDLSYNMLSGPIPAGLLSQLNLVSVDLSNNSLSGPLPADISSSIVRLRLGGNSLNGTISPKPFATGQNLMYVELEANNLTGQIPSEVGSCQNLALLNLAQNQLSGELPAELGKLKNLQVLQLQGNKLSGQIPTQVSQLKKLLTLNLSDNSLNGTIPQAMFNLVTLSKLYLQQNKLSGSIPTSIIGMESLIELQLGENQLSGSIPKMPVSLQIALNLSRNLFAGPIPSILDGLNNLEILDLSNNKFDGKIPDFLTSMPALTQLQLSNNSLSGVIPDFNSHVKVDLGGNNGLVNKTGTPNTSPRSPKGSPVVMAVLVAIAAAVFLVGLVTVLAVLISRRLYKVNDEHLQPYEDPQPPQVIQGNLLTPNGIHRSNIDFSKAMKDVAETSNVTLKTRFSTYYKTIMPSGSIYFVKKLNWSEKLFPLGSHDKFGKELEVLAKLNNSNVMTPLAYVLSTDSAYILYEFISNGSLYDALHGSLRNSLDWASRYSIAVGAAQGLSFLHGFTSGPILLLDLSSKSIMLKSLKEPLVGDIELYKVTDPSKSTGSFSAVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKPAVTDGTELVKWVMRNSVKQEHILDFSVSKTSQAVKTQMLAILQVALACVSSSPEARPKMKSVLRMLLNAR 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00050 915 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 1 156 - -
Accr18g00050 915 ProSiteProfiles Protein kinase domain profile. 642 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr18g00050 915 Gene3D Ribonuclease Inhibitor 154 254 IPR032675 -
Accr18g00050 915 Gene3D Ribonuclease Inhibitor 255 560 IPR032675 -
Accr18g00050 915 Gene3D Transferase(Phosphotransferase) domain 1 722 915 - -
Accr18g00050 915 Gene3D Ribonuclease Inhibitor 4 153 IPR032675 -
Accr18g00050 915 SUPERFAMILY L domain-like 23 297 - -
Accr18g00050 915 Pfam Protein tyrosine and serine/threonine kinase 684 911 IPR001245 GO:0004672|GO:0006468
Accr18g00050 915 ProSiteProfiles Leucine-rich repeat profile. 64 85 IPR001611 GO:0005515
Accr18g00050 915 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 159 253 - -
Accr18g00050 915 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 185 911 - -
Accr18g00050 915 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 722 915 - -
Accr18g00050 915 SUPERFAMILY RNI-like 225 547 - -
Accr18g00050 915 PRINTS Leucine-rich repeat signature 491 504 - -
Accr18g00050 915 PRINTS Leucine-rich repeat signature 65 78 - -
Accr18g00050 915 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 297 560 - -
Accr18g00050 915 ProSiteProfiles Leucine-rich repeat profile. 493 515 IPR001611 GO:0005515
Accr18g00050 915 Pfam Leucine rich repeat 64 125 IPR001611 GO:0005515
Accr18g00050 915 Pfam Leucine rich repeat 473 528 IPR001611 GO:0005515
Accr18g00050 915 Pfam Leucine rich repeat 162 221 IPR001611 GO:0005515
Accr18g00050 915 Pfam Leucine rich repeat 375 434 IPR001611 GO:0005515
Accr18g00050 915 SMART LRR_typ_2 208 232 IPR003591 -
Accr18g00050 915 SMART LRR_typ_2 397 421 IPR003591 -
Accr18g00050 915 SMART LRR_typ_2 136 160 IPR003591 -
Accr18g00050 915 SMART LRR_typ_2 373 396 IPR003591 -
Accr18g00050 915 SMART LRR_typ_2 515 538 IPR003591 -
Accr18g00050 915 SMART LRR_typ_2 491 514 IPR003591 -
Accr18g00050 915 SMART LRR_typ_2 62 85 IPR003591 -
Accr18g00050 915 Gene3D Phosphorylase Kinase; domain 1 629 721 - -
Accr18g00050 915 SUPERFAMILY Protein kinase-like (PK-like) 653 911 IPR011009 -
Accr18g00050 915 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 610 721 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00050 115 911 Receptor kinase-like Gene Family AT2G41820 39.398 7.40e-157 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Accr18g00050 PK_Tyr_Ser-Thr 7.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr18g00050 - - qsa:O6P43_004096 1113.21