Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00048 ATGGGTGGGTATGGGTACATATCGTCTTTTTTCTTCGTTTCTCTGTGCTTTTGGTTCTGCCCAATGGTGTTGTGTAAGCTATCCCAGAACCAAAACAACACCATGATCTCACTCTCCCGGCTTCTTAATGGAACCGACTTAACTGATTCATGGAACATTGCCACAAACCCGAATCCATGTCATTGGAAGGGAGTTGCTTGTGATCAGACCAATTCCTCTGTAATCAAATTTCTTCTATATAGACATTCCATCTCTTCCTCTGAATTCCTGACTCTTCTCTGCCAAATTGAAAGCTTGCAGCATCTTGATCTTTCTGGTAACAGCATTAGCTCAATTCCAGACGATTTCATCACTGATTGTGGAAAGGTTGCGGGGTTGAAGTTGCTTAATTTCAGTTCTAACAACATATGGGGTCCCTTGCCTACTTTTCGTGGATTTGATGGTCTAGAATCCCTGGATATGTCTTTCAATCACTTTTCTGGAAAAGTTGATTCTGAGTTAGCTGAATTAGCCAGCCTCAAGAGCTTAAATCTTAGTTTCAATTCTTTCGATGGGCCCCTTCCTACCAAACTGGGAAATTCCGCCAATTTGGAGCAGCTTGAGTTAAGTAATAATCATTTTGTAGGAAAAATCCCTGCTGAAATCCTGAGTTACACAAATTTGACTGTGCTTGATCTTAGAACAAATAACATTTCAGGGTCTATTCCTGGCAACATAGGAGATCTGTCCAGATTGGAAACTTTGATTCTGTCCTCTAATCAGCTCGGAGGGGAAGTCCCAAGTGCACTCTCGAACATCAAGACCCTTGTCCGTTTTGCAGCCAATCAAAACGAATTTAGTGGTTCTGTTCCCAGCGGAATTACAAGATTTCTCAGGAACTTGGATCTCAGTTATAATAAGTTGTCCGGGCCTATTCCAGCGGGCCTTCTTTCACAATTAAATCTGTTGTCCGTCGATTTGTCCAGCAACTCGTTATCTGGGCCTTTACCTGCAGACATATCTTCTAGCATTGTCTGGTTGAGATTAGGGGGCAATTCTCTAAATGGGACGATATCTCCAAAGGCATTTGCCACAGGTCAGAATTTGATGTATGTCGAACTCGAAGCCAATAACTTGACGGGCCAAATACCTTCTGAGGTGGGTTCTTGCCAGAACTTAGCCTTGTTAAACTTGGCTCAGAATCAGCTATCTGGTGAATTGCCTGCAGAGCTTGGCAAGCTTAAAAATCTTCAAGTCTTGCAGCTTCAAGGGAATAAGCTTTCTGGACAAATACCAACTCAAGTGTCTCAACTAAAGAAGCTGTTGACGCTGAATTTGAGCGACAATTCTCTGAATGGAACCATTCCGCAAGCAATGTTCAATTTGGTAACGCTTAGTAAGCTTTACTTACAGCAAAACAAACTGAGTGGTTCTATTCCCACATCTATAATTGGCATGGAGTCTCTTATTGAACTTCAACTTGGAGAAAACCAGCTAAGTGGTTCGATTCCAAAAATGCCAGTGAGTCTTCAGATTGCCTTGAATCTCAGCAGAAATCTCTTTGCGGGGCCTATTCCTAGCATTCTTGATGGATTGAATAACCTGGAAATCTTGGATCTCTCAAATAACAAATTTGATGGTAAAATTCCTGATTTTCTCACCAGCATGCCGGCTTTGACACAGTTGCAACTTTCTAATAATTCGCTGTCTGGTGTCATTCCCGACTTTAATTCTCATGTTAAAGTTGATTTGGGTGGAAATAATGGTCTCGTAAACAAAACTGGAACTCCCAACACTTCTCCAAGATCTCCAAAGGGAAGTCCTGTTGTCATGGCAGTTCTTGTTGCAATTGCAGCTGCAGTTTTTCTGGTTGGCCTGGTCACTGTGCTGGCTGTATTAATCTCCCGACGCCTATACAAGGTAAATGACGAACACTTGCAGCCATATGAAGACCCTCAACCCCCTCAGGTCATCCAAGGTAACTTATTAACTCCCAACGGAATTCACAGATCCAACATTGATTTCTCTAAGGCCATGAAAGATGTTGCTGAAACATCAAACGTTACTCTGAAAACGAGGTTTTCAACTTATTACAAGACTATTATGCCATCTGGATCAATCTACTTTGTCAAGAAGCTTAACTGGAGTGAGAAGCTATTCCCACTGGGCAGCCATGATAAATTTGGTAAAGAGCTAGAGGTCTTGGCAAAATTGAACAATTCAAATGTCATGACTCCTTTGGCTTATGTTCTGTCCACTGACAGCGCTTACATACTGTATGAATTTATCTCAAATGGCTCCCTATATGATGCTCTTCATGGAAGCTTGCGAAACTCTTTAGATTGGGCTAGCAGATATAGTATAGCTGTTGGGGCGGCTCAAGGTCTCTCTTTTCTGCATGGATTTACCTCAGGTCCAATTCTTCTCCTTGACCTATCAAGTAAAAGTATAATGCTGAAGTCCCTCAAGGAGCCTCTAGTTGGAGATATTGAACTCTACAAGGTGACTGATCCTTCAAAGAGTACAGGAAGTTTTTCTGCAGTTGCTGGTTCTGTTGGCTATATTCCTCCAGAGTATGCATACACAATGAGAGTGACAATGGCTGGGAATGTGTACAGTTTTGGGGTGATCCTGCTTGAATTGTTGACGGGAAAGCCAGCAGTGACTGATGGGACTGAATTGGTGAAGTGGGTGATGCGCAACTCGGTGAAGCAAGAACACATTCTGGATTTTAGTGTCAGTAAAACATCTCAGGCTGTCAAAACCCAGATGCTTGCCATTCTTCAGGTAGCTCTTGCCTGTGTCAGTTCATCCCCTGAAGCAAGACCAAAGATGAAGAGTGTGCTCCGGATGCTCCTGAATGCACGATAA 2850 0.426 MGGYGYISSFFFVSLCFWFCPMVLCKLSQNQNNTMISLSRLLNGTDLTDSWNIATNPNPCHWKGVACDQTNSSVIKFLLYRHSISSSEFLTLLCQIESLQHLDLSGNSISSIPDDFITDCGKVAGLKLLNFSSNNIWGPLPTFRGFDGLESLDMSFNHFSGKVDSELAELASLKSLNLSFNSFDGPLPTKLGNSANLEQLELSNNHFVGKIPAEILSYTNLTVLDLRTNNISGSIPGNIGDLSRLETLILSSNQLGGEVPSALSNIKTLVRFAANQNEFSGSVPSGITRFLRNLDLSYNKLSGPIPAGLLSQLNLLSVDLSSNSLSGPLPADISSSIVWLRLGGNSLNGTISPKAFATGQNLMYVELEANNLTGQIPSEVGSCQNLALLNLAQNQLSGELPAELGKLKNLQVLQLQGNKLSGQIPTQVSQLKKLLTLNLSDNSLNGTIPQAMFNLVTLSKLYLQQNKLSGSIPTSIIGMESLIELQLGENQLSGSIPKMPVSLQIALNLSRNLFAGPIPSILDGLNNLEILDLSNNKFDGKIPDFLTSMPALTQLQLSNNSLSGVIPDFNSHVKVDLGGNNGLVNKTGTPNTSPRSPKGSPVVMAVLVAIAAAVFLVGLVTVLAVLISRRLYKVNDEHLQPYEDPQPPQVIQGNLLTPNGIHRSNIDFSKAMKDVAETSNVTLKTRFSTYYKTIMPSGSIYFVKKLNWSEKLFPLGSHDKFGKELEVLAKLNNSNVMTPLAYVLSTDSAYILYEFISNGSLYDALHGSLRNSLDWASRYSIAVGAAQGLSFLHGFTSGPILLLDLSSKSIMLKSLKEPLVGDIELYKVTDPSKSTGSFSAVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKPAVTDGTELVKWVMRNSVKQEHILDFSVSKTSQAVKTQMLAILQVALACVSSSPEARPKMKSVLRMLLNAR 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00048 949 Gene3D Ribonuclease Inhibitor 188 289 IPR032675 -
Accr18g00048 949 Gene3D Ribonuclease Inhibitor 31 187 IPR032675 -
Accr18g00048 949 SMART LRR_typ_2 242 266 IPR003591 -
Accr18g00048 949 SMART LRR_typ_2 431 455 IPR003591 -
Accr18g00048 949 SMART LRR_typ_2 407 430 IPR003591 -
Accr18g00048 949 SMART LRR_typ_2 549 572 IPR003591 -
Accr18g00048 949 SMART LRR_typ_2 525 548 IPR003591 -
Accr18g00048 949 SMART LRR_typ_2 170 194 IPR003591 -
Accr18g00048 949 SMART LRR_typ_2 96 119 IPR003591 -
Accr18g00048 949 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 644 755 - -
Accr18g00048 949 Gene3D Transferase(Phosphotransferase) domain 1 756 949 - -
Accr18g00048 949 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 331 593 - -
Accr18g00048 949 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 29 190 - -
Accr18g00048 949 Gene3D Phosphorylase Kinase; domain 1 663 755 - -
Accr18g00048 949 SUPERFAMILY Protein kinase-like (PK-like) 687 945 IPR011009 -
Accr18g00048 949 ProSiteProfiles Protein kinase domain profile. 676 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr18g00048 949 Pfam Protein tyrosine and serine/threonine kinase 718 945 IPR001245 GO:0004672|GO:0006468
Accr18g00048 949 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 33 945 - -
Accr18g00048 949 Pfam Leucine rich repeat N-terminal domain 45 68 IPR013210 -
Accr18g00048 949 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 756 949 - -
Accr18g00048 949 ProSiteProfiles Leucine-rich repeat profile. 527 549 IPR001611 GO:0005515
Accr18g00048 949 Pfam Leucine rich repeat 98 159 IPR001611 GO:0005515
Accr18g00048 949 Pfam Leucine rich repeat 409 468 IPR001611 GO:0005515
Accr18g00048 949 Pfam Leucine rich repeat 196 255 IPR001611 GO:0005515
Accr18g00048 949 Pfam Leucine rich repeat 507 562 IPR001611 GO:0005515
Accr18g00048 949 ProSiteProfiles Leucine-rich repeat profile. 98 119 IPR001611 GO:0005515
Accr18g00048 949 SUPERFAMILY RNI-like 259 581 - -
Accr18g00048 949 Gene3D Ribonuclease Inhibitor 290 594 IPR032675 -
Accr18g00048 949 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 193 286 - -
Accr18g00048 949 PRINTS Leucine-rich repeat signature 291 304 - -
Accr18g00048 949 PRINTS Leucine-rich repeat signature 525 538 - -
Accr18g00048 949 SUPERFAMILY L domain-like 43 331 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00048 149 945 Receptor kinase-like Gene Family AT2G41820 39.277 1.93e-155 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Accr18g00048 PK_Tyr_Ser-Thr 7.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr18g00048 - - qsa:O6P43_004096 1147.5