Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00033 ATGGCGGGAAGCGTAAATCTTGTCATCTTTTTCTTGTCTCTGTTGCTTGCACATTATACTGCAGAAGCCTGGACGGAGGTGAACTCGAAGGATATCTATCCGAGCAATCGTCTTTTCTTCAAGGAACGCGAATCTGCTTTTGGCCCGAGGGCTTCAAGTTCTGGAGAACCGGGGATTTTGCATTTGGCGGAGCCACTTGATGCTTGTGGTGCTCTGGCTAATAATGCTGACCAAATTTCAAAAGTAAGAAACCCTTTTGTTTTGATTGTTAGAGGCCAATGTAGCTTTGTGGAAAAGGTCACTAGAGCACAAGAGGCTGGCTTCAAAGCTGCAATTATCTACGATAATAAAGATGATGGTTTCTTAATTAAAATGAGAGGAAATGATTCAGGTGCCATAAATATACCTTCTACATTCGTAACAAAAGCTACAGGGGAATTGCTGAGGAAATATGCTGGATCAGAGATTTGGATAACGCCAAATTATGGATACTCAGAAACAGTACTTGCTATCGTGGGAACTTGGGTGGTGGTTTTAATGACCATATTCATTGGCTTGTATGCTTTATATGGTGTGTGGAGGGTGTTTGGAAGAGGATATCATAGAAGTTCAGGCATGAGAATGAGTAGGCATTTAGTGAATGAAATCCCAAGTTTAATATTCAGCTCCTCTGCTGTGGAGGATAGTTCCACTTCATCATCAACATGTGCCATATGCCTTGATGATTATAGCATAGGAGACAAGCTCAGGATTCTGCCCTGCCTTCACAAGTTTCATGCTAGCTGTGTGGATAAATGGCTTACTTTACGGAGAAGCTTCTGTCCTGTCTGTAAGCGTCATGCAAAAACTGGATTGCCTCAAACACCACCACCTTCAGAATCCACACCTTTTTTTTCTGCGTCTCCTCCTTCTGTTCGCTCCTTCATAGCCATAGCCATCTCCCCAAGGTTATCTGTACCTTCTTACTTGAGCCGTTCTTGCCCATCATCATTATCATCTCTGAACCCAACCACTCCCATTAATCAAACGCTAACCACTGCTTCTAATTTTTCTCCGCAATGCAACACTGTTTAG 1074 0.4283 MAGSVNLVIFFLSLLLAHYTAEAWTEVNSKDIYPSNRLFFKERESAFGPRASSSGEPGILHLAEPLDACGALANNADQISKVRNPFVLIVRGQCSFVEKVTRAQEAGFKAAIIYDNKDDGFLIKMRGNDSGAINIPSTFVTKATGELLRKYAGSEIWITPNYGYSETVLAIVGTWVVVLMTIFIGLYALYGVWRVFGRGYHRSSGMRMSRHLVNEIPSLIFSSSAVEDSSTSSSTCAICLDDYSIGDKLRILPCLHKFHASCVDKWLTLRRSFCPVCKRHAKTGLPQTPPPSESTPFFSASPPSVRSFIAIAISPRLSVPSYLSRSCPSSLSSLNPTTPINQTLTTASNFSPQCNTV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00033 357 ProSiteProfiles Zinc finger RING-type profile. 236 278 IPR001841 -
Accr18g00033 357 FunFam Putative RING zinc finger domain superfamily protein 204 283 - -
Accr18g00033 357 Pfam Ring finger domain 235 278 IPR001841 -
Accr18g00033 357 CDD PA_C_RZF_like 40 162 IPR044744 -
Accr18g00033 357 SUPERFAMILY PA domain 82 149 IPR046450 -
Accr18g00033 357 Gene3D - 26 161 - -
Accr18g00033 357 SUPERFAMILY RING/U-box 209 292 - -
Accr18g00033 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 283 IPR013083 -
Accr18g00033 357 SMART ringv_2 235 278 IPR011016 GO:0008270
Accr18g00033 357 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 208 288 - -
Accr18g00033 357 Pfam PA domain 67 148 IPR003137 -
Accr18g00033 357 SMART ring_2 236 277 IPR001841 -
Accr18g00033 357 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 32 159 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00033 40 301 C3H Transcription Factor Family AT1G22670 42.910 1.44e-63 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr18g00033 K15692 - tcc:18592961 255.373