Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00018 ATGACAGATTTTCAACCGCTACAACAGAAGCCTGAATCCACTGATGCCCATGCTGAGTTTGAACGTGGCCTGGAGGACTTTATGCGGGGCCACTTGGATGATTGCATCTCCTTTGCTTCATGTAGTTCTGCCCGAACTCAGGATGGGGAGGGTGATGAGGGTGATCAGCTGGTTAGGAGGAGAAGAAGATCTGATCTTGAGGGCGATGATTTAGCAGAGTCATCGGCTGCACGCCGGCGCCACTCACGGATTTTGAGCAGATGGGCTGCCCACCAGGCCCAAGAAATGATAACCACAATGGAGAGGAGGAATCGGGAGTCTGAGTTGATGGCACTTGCAGGACTACACACAGTCTCAATGTTGGATTCCTCTTTTTTGAGGGGATCACAGACTCCAACTTCTGGCCAGGAGGGGGCTGTAGAGAGGCCCAGCACTCAGGCTTCTGCAATTCTTCAGATGTGGCGTGAATTGGAGGATGAACACTTACTTAATAGGGCACGTGAAAGAATGAGGGAAAGGTTGCGTCAACGAAGGATTGCTGACTCTAATGCCAATGGATCAAGTACCATGTCAGATACTCGGGGAAGTGAGAATCAGGGCAGTTTGGTGGATGCTAGTGAAAGCGAAAATGATTATGGGACTTGGTCACATGATCAGATTCCATCACCGCATGAAAATGGTGACCATAATGGGTCTAGCCGGGAGCAATCTCCTGACCTTGGTGATGTTGAGAGGGAGAGAGTTAGACAGATTGTGCGGGGATGGATGGAAAGTGGCATCAGTGATCATTCATCTAATTCAAGTCAGAGAAACAATAATCGCAGAGCAGAGTGGCTTGGTGAAACAGAGCGTGAAAGAGTAAGAATTGTCAGGGAGTGGGTGCAAATGACAAGTCAGCAGCGAGGTTCTCGTGGGAGCCGGAGGGATAGCCAAGTCACTGAAAGTGGTTCTCTAGTTGAGAGAGTTCGTGATGGACTGTTAACTGATCATGATGAGAGCCAGCCAGAGCATGTACATAGAGATTTGTTGAGGTTGCGTGGAAGACAAGCTCTGGTTGATTTGCTTGTGAGGGTTGAAAGGGAAAGACAAAGAGAGCTGCAAGGTTTGTTGGAACACCGTGCTGTTTCTGATTTTGCTCATCGTAACCGCATTCAGTCATTACTCAGAGGTAGATTCCTCCGAAATGAAAGAACTATAGAAGATGAGAGGCCTCCTTCTGTGGCTGCAAATGAATTAGTTCAGTTAAGACAACGTCACACAGTCTCTGGTTTAAGAGAAGGGTTTCGCTCAAGATTAGAAAATATTGTTCGTGGTCACACTAGCAGCAGTTCTGATGCCGCATCTAATAGTAATATCAGTGAAACGAGAAGTGACGTGAACCAAGAAAACAATTCAATAGATGCCCAGCATGAAAGTTATCAACAAAGGCAGATTAGGAGCCTTGAAACTGATGTGCAGCAGTTGGCTGATCAAACAGGAACTTTTGAAAGTAGCACTAGTGAGAGTTTAAGTTGGCAAGAAACTAGTAATCAAGGAGGGAACTGGCAGGAACAAGTTACTGAAGATGGTCATGGAAATTGGCAACGGAGAACTTATGGTCCATTGAATCAGTTAAGAGATGGAAGTGCTGTTAATGATTGGCGACAGGATTCTCCAACAAATGTAGAAGGGGAAGATACACATCCACGAGAAGCTCAGGGAATTTGGCATGAGTCTAATTCAAGGGAAGCTGCTGGTAATTGGTCAGAAGAACCTTCTGGTCCTCCAAGGAATCGACGTGGTGTTCCTTTTAGGAGATTCAATCGATTTCATCCACCTGATGATGACAATGTATATAGCATGGAGCTTAGAGAACTTTTGAGCAGGAGAAGTGTTTCCAATCTTCTTCGCAGTGGTTTCCGTGAAAGTCTGGACCAATTAATCCAGTCGTATGTGGAAAGGCAAAATCGTGCACCTATTGACTGGGATTTGCACAGAAACTTGCCAACGCCAACTCCTGCCTCATCTGATAGGGATCCTGAACAACAGGCAGATGAACGTAATGGGGTTCAACATGGTGCCATTAATAGGCCTTCTCTAGTGTTGCCATCTCCTCCAGTTCCTCCACCTCAACCACTTTGGCACCAGGACTTGCATCAGACTGGATGGTCTCGCCATAGCATGCATCGATCTGAAATTGAATGGGAGATAATCAATGATTTGAGATCAGACATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCTTGCATGGATATGCAACTGGAGTTACAGCGCTCTGTCAGACAGGAAGTGTCCGCAGCACTGAATCGTTCAGCGGGTGAAAGTGGAATGGGGGTTGAGACATCTGAGGATGGCTCTAAATGGGGTCATGTGAAAAAAGGAACTTGTTGTGTTTGTTGTGATAGCCATATTGATTCGCTCTTGTACAGATGTGGTCACATGTGCACATGTTCAAAATGTGCCAATGAATTAGTTCGTGGAGGAGGAAAGTGCCCTTTATGCCGAGCACCTATTGTGGAGGTGATCCGAGCATATTCCGTTATGTAA 2565 0.4643 MTDFQPLQQKPESTDAHAEFERGLEDFMRGHLDDCISFASCSSARTQDGEGDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAAHQAQEMITTMERRNRESELMALAGLHTVSMLDSSFLRGSQTPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRERLRQRRIADSNANGSSTMSDTRGSENQGSLVDASESENDYGTWSHDQIPSPHENGDHNGSSREQSPDLGDVERERVRQIVRGWMESGISDHSSNSSQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDSQVTESGSLVERVRDGLLTDHDESQPEHVHRDLLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTIEDERPPSVAANELVQLRQRHTVSGLREGFRSRLENIVRGHTSSSSDAASNSNISETRSDVNQENNSIDAQHESYQQRQIRSLETDVQQLADQTGTFESSTSESLSWQETSNQGGNWQEQVTEDGHGNWQRRTYGPLNQLRDGSAVNDWRQDSPTNVEGEDTHPREAQGIWHESNSREAAGNWSEEPSGPPRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQNRAPIDWDLHRNLPTPTPASSDRDPEQQADERNGVQHGAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIINDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGESGMGVETSEDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSVM 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00018 854 ProSiteProfiles Zinc finger RING-type profile. 802 841 IPR001841 -
Accr18g00018 854 MobiDBLite consensus disorder prediction 255 277 - -
Accr18g00018 854 MobiDBLite consensus disorder prediction 655 681 - -
Accr18g00018 854 MobiDBLite consensus disorder prediction 48 78 - -
Accr18g00018 854 MobiDBLite consensus disorder prediction 485 522 - -
Accr18g00018 854 MobiDBLite consensus disorder prediction 42 78 - -
Accr18g00018 854 MobiDBLite consensus disorder prediction 180 221 - -
Accr18g00018 854 MobiDBLite consensus disorder prediction 296 317 - -
Accr18g00018 854 MobiDBLite consensus disorder prediction 437 463 - -
Accr18g00018 854 MobiDBLite consensus disorder prediction 174 243 - -
Accr18g00018 854 SUPERFAMILY RING/U-box 801 847 - -
Accr18g00018 854 Coils Coil 731 751 - -
Accr18g00018 854 CDD mRING-HC-C3HC5_NEU1 799 851 - -
Accr18g00018 854 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 854 - -
Accr18g00018 854 MobiDBLite consensus disorder prediction 127 146 - -
Accr18g00018 854 MobiDBLite consensus disorder prediction 259 275 - -
Accr18g00018 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 789 852 IPR013083 -
Accr18g00018 854 Pfam Zinc finger, C3HC4 type (RING finger) 799 846 - -
Accr18g00018 854 MobiDBLite consensus disorder prediction 296 333 - -
Accr18g00018 854 MobiDBLite consensus disorder prediction 552 570 - -
Accr18g00018 854 MobiDBLite consensus disorder prediction 485 597 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00018 766 848 C3H Transcription Factor Family AT3G06140 31.325 6.93e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr18g00018 - - gmx:100805607 1339.32