Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00010 ATGGGTCGTGATTCCCCAACTTCACTCGCTCCGGGCTTCCGTTTCCACCCCACCGACGAAGAACTCGTTCGTTACTACCTCAGACGCAAGGTCTCCGGCAAATCCTTTCGCTTCGACCCTATCGCCGTCATCGACATCTATAAATCCGAACCTTGGGACCTTCCATGTCAGTCGAAGCTGAAAAGCAGGGACTTGGAGTGGTACTTCTTCAGTGCGCTGGACAAGAAGTATGGAAATGGGTCGAGGACGAATCGGGCTACTGAGAAAGGATACTGGAAGACTACGGGCAAGGATCGCCCAGTTCGACACAGCTCTCGTACCATCGGAATGAAGAAGACCCTCGTTTATCATGGTGGGCGGGCGCCGCGCGGTACCCGTACCAACTGGGTCATGCACGAGTACAGATTAGCTGATGAAGAATTGGCAAAAGCAGAAATACCACAGGATGCGTTTGTGCTTTGTAGGATTTTCCAGAAGAGTGGTTCTGGGCCAAAGAATGGGGAGCAGTATGGTGCCCCCTTTATCGAGGAGGAATGGGAAGAGGATGATGTTACCGTGGCTCCACTGCCCAGTTATGAGGCTGCAACTGATGAAATAATTGTCGATGATGAAGCTTATGTTGAAACTGATGACCTTGACCAGTACCTTGATATGGGTGTGGCTTCTGAAGGTGCTGGTCATGCATTAAACTTCTATCATGGGGAGTGCAGCAGTTATCGTGAGCATTCCCTAGAATTAATTGAAGATCAAGAGCCCTTGCTAGGAACTTCTGGAACTTGTGAGCCTCAAGATGACCTTTTAGTGAATAAGCCTGAGCAACATGCTTCTGATGACAAACCAGTAAAAGATGGCATCAAGGCTGAAGCAACTCGTGAAGGATATTTCTTGAATGACAAATGCACTTTTGATGAGACATACTTGGATGCCACTGATGGATCATTCCTGGAAACTGATGATCTGGCAAATCCTGCTGATACTGATGTCCTTGAAGAGTATCTTACATACTTTAATAGCGTTGATGATATTACCCAGTATATCTCTTTCGATTCTCCAGAGTTGACAGAGAGTGAAAACCCTGATACTGACCAAGGACCACGTTTAACCCAACTGAATGTGGGCGGAGAATCCAAGGATATTGTCATGGCAGGTAAAATTGATGTGGAAGCCCAATCTAGCAAAGAAGCTTCTTTGAAGCAGCATCTAGAGACATCAAAATTGGTGTCAGAAAATACATACCCATTTATGAAGCAGGCCAGTCACATGCTGGGCAGTATCCCTGCTCCCCCTGCAGTTACTTATGAGTTTCCTCCTAAAGAAATTGCTCTCCGTCTTCATTCTACGGGTCAATGTTCCAATTCAGCTCATGTAACTGCAGGTATGATCAGAATAACAGACTTCTCTGTAACAGACAACAGGATGGACTGGATGCTGCGCAAAAATGGAGAGTTCAGTGTTGTGATCTCATCTTGCTTTTGGCCTGATGTTAACTCTGTTGCTTCAGTGCCTATTTCTGGTTTACTCTCTGGGAAGTCTGCACTTGTAGTGTCACACGGCTGGATATTCTTAGTCTTCTTTTCAGTGCTGATTCTCTCACTGAGTTTCAAGATTGGAAGTTTCATGTATACCGGCAAATGA 1635 0.4612 MGRDSPTSLAPGFRFHPTDEELVRYYLRRKVSGKSFRFDPIAVIDIYKSEPWDLPCQSKLKSRDLEWYFFSALDKKYGNGSRTNRATEKGYWKTTGKDRPVRHSSRTIGMKKTLVYHGGRAPRGTRTNWVMHEYRLADEELAKAEIPQDAFVLCRIFQKSGSGPKNGEQYGAPFIEEEWEEDDVTVAPLPSYEAATDEIIVDDEAYVETDDLDQYLDMGVASEGAGHALNFYHGECSSYREHSLELIEDQEPLLGTSGTCEPQDDLLVNKPEQHASDDKPVKDGIKAEATREGYFLNDKCTFDETYLDATDGSFLETDDLANPADTDVLEEYLTYFNSVDDITQYISFDSPELTESENPDTDQGPRLTQLNVGGESKDIVMAGKIDVEAQSSKEASLKQHLETSKLVSENTYPFMKQASHMLGSIPAPPAVTYEFPPKEIALRLHSTGQCSNSAHVTAGMIRITDFSVTDNRMDWMLRKNGEFSVVISSCFWPDVNSVASVPISGLLSGKSALVVSHGWIFLVFFSVLILSLSFKIGSFMYTGK 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00010 544 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Accr18g00010 544 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 233 - -
Accr18g00010 544 Pfam No apical meristem (NAM) protein 11 136 IPR003441 GO:0003677|GO:0006355
Accr18g00010 544 FunFam Nac domain-containing protein 86 18 162 - -
Accr18g00010 544 SUPERFAMILY NAC domain 8 159 IPR036093 GO:0003677|GO:0006355
Accr18g00010 544 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00010 1 536 NAC Transcription Factor Family AT5G04410 45.533 1.08e-144 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr18g00010 NAM 4.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr18g00010 - - qsa:O6P43_004975 613.609