Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00007 ATGATGATTCCCATTAGCTACTGCGTCATTCTCTCTGTATGGCTCCTCACCTTCCCTTTCTCTCCGCCGACCATCAAAGCTGCCTTCAACCCTGAACATGTGGTTATGGATGTTCAAAGGAGAATCAACGCGTCTCTCTCCAGAAGACAACTCCTCCCCGTCGACAAATTCGACCAAGCTCCAGGCTGCCTCACGGGCAATCCCATCGACGACTGCTGGCGGTGCGACCCCAACTGGGCCGCCGACCGCCAGAAGCTAGCCGACTGTGGTATTGGGTTCGGCACCGACGCTGCGGGCGGCAAGGGCGGCCAGTTCTACATCGTTACCGACCCTTCCGATAACGACCCGGTGAACCCAGCTCCGGGAACAATTAGGCACGCCGTAATCCAAGACGCCCCCCTCTGGATCGTCTTCGCAGGCAACATGATGATCACCCTGAAGCACGAGCTGATGTTCAACAGCTTCAAGACGATCGACGGACGTGGCGCCAGCGTGCACATCACCGGCAACGGCTGCATCACGCTGCAGTACGTGACGAACATCATCATCCACAACGTGCACATCCACCACTGCAGGCCGTCAAGCAAAACGATGATAAGGGTGAGTCCAACAAAGGTGGGATTTAGAGGGGAATCGGACGGCGACGGGGTGTCGATCTATGGGTCACAAAAGCTCTGGATAGACCATTGCAGGCTGGCGTATTGCACGGACGGACTAATAGACGCGATAATGGGGTCGACAGGGATAACGATATCGAACAACCATTTCTCTCATCACGACAAGGTGATGCTGCTGGGGCATGATGATAGGTATGTAGGGGATAGGAGAATGGAGGTGACAGTGGCATTCAATCACTTCGGGGAGAAGCTGGTGCAGCGGATGCCGCGTTGCAGATACGGATACGTACACGTGGTGAACAACGATTACACGCAGTGGGAGATGTACGCCATCGGAGGCAGTGCGGCGCCGACCATAAACAGCCAGGGTAACCGCTACACTGCTCCGCCCAATGCTAATGCCAAGGAGGTGACCAAGAGGGTGGGCACAGATGAGAGAGAGTGGGCCAGTTGGAATTGGAAGACGGAAGGGGACCTATTGGTGAACGGAGCGTACTTCGTGGCATCGGGCAATTGGATGAGCACCCAATTCGAGTATGAGTCGTCTCTACCGCCCCAATCCGCCCTTCACATCGACCTCCTCACCCTCAACGCCGGCGTCTTCAACGACCCAGGGAAAGTGGGGATGTATATCCTAGCGTCTTCATGGAGAACGGCGGAGATGGAGTGA 1287 0.5594 MMIPISYCVILSVWLLTFPFSPPTIKAAFNPEHVVMDVQRRINASLSRRQLLPVDKFDQAPGCLTGNPIDDCWRCDPNWAADRQKLADCGIGFGTDAAGGKGGQFYIVTDPSDNDPVNPAPGTIRHAVIQDAPLWIVFAGNMMITLKHELMFNSFKTIDGRGASVHITGNGCITLQYVTNIIIHNVHIHHCRPSSKTMIRVSPTKVGFRGESDGDGVSIYGSQKLWIDHCRLAYCTDGLIDAIMGSTGITISNNHFSHHDKVMLLGHDDRYVGDRRMEVTVAFNHFGEKLVQRMPRCRYGYVHVVNNDYTQWEMYAIGGSAAPTINSQGNRYTAPPNANAKEVTKRVGTDEREWASWNWKTEGDLLVNGAYFVASGNWMSTQFEYESSLPPQSALHIDLLTLNAGVFNDPGKVGMYILASSWRTAEME 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00007 428 Pfam Pectate lyase 148 328 IPR002022 -
Accr18g00007 428 PANTHER PECTATE LYASE 18-RELATED 30 407 IPR045032 GO:0030570
Accr18g00007 428 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Accr18g00007 428 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Accr18g00007 428 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Accr18g00007 428 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Accr18g00007 428 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Accr18g00007 428 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Accr18g00007 428 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Accr18g00007 428 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Accr18g00007 428 Gene3D - 66 408 IPR012334 -
Accr18g00007 428 SMART amb_all 141 338 IPR002022 -
Accr18g00007 428 FunFam Pectate lyase 66 408 - -
Accr18g00007 428 SUPERFAMILY Pectin lyase-like 63 382 IPR011050 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00007 1 428 Polysaccharide Lyase AT3G53190 61.432 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr18g00007 K01728 - cave:132187093 592.808