Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00002 ATGAGTGGGAATGAGAATTCCAAGGCCGTGGCGGTGGATCGATTGCTTGCTTCTATCAAGGAGATTTCGGGGTTACCTGAGTGTCGAAACGTTTGCAAGAGGATGTATGGGAATTTAGTTCGGAGGGTGAAGTTATTGAGCCCGTTGTTCGAGGAAATTAAGGATAGTGATTGTGAGTTGCTTAGCGACGAACATATTAGATCGTTTGAATCGCTGGGGAATGCTTTGGGTTCAGCTAAGAGCCTCCTCGAGTTCATGAACCAAGGGAGTAAGCTTTATCGGGCTTTGCAGAGGAATGAAATGGTAGAAAAGTTTCAACAAATAAATGACCAAATTGAAGCAGAAATTCGTGTACTTCAATATGAAAAGTTTGAAATATCAGAGGAAGTTCGAGAACAGATTGAACTTGTGCATGCTCAGTTTAAAAGAGCAAATGCTAGAACTGAATTAGCTGATTTACAACTAGATTCGGATTTAGCTGTGGCACAAAAAGAAAAAGACCCCGGTCCTGAAATACTCAATAGGCTTTCTGAGAAGTTGCATCTGAAGACTATAAATGACCTCAAGAAAGAATCAGCTGAATTGCATGACTTGGTGATCACAAGTGGTGGAGAACTAGGGGACTCTATTGAGATGATGTCATCTCTTCTTAAGAGACTGAAGAACTGTGTGCTCAATGAGAACCCTGAAGTTGACCCCCGTGAGGGTGAAAAAATTTCAATGAAGCACAGATCTCCTGTAATTCCTGATGATTTTAGATGTCCAATATCTCTTGAACTAATGAAAGATCCTGTAATTGTCTCTACTGGCCAGACATACGAAAGATCTTGCATTCAAAAATGGCTTGATGCTGGGAACAAAACATGTCCGAAGACACAGCAAACACTTTTGCACACAGCCTTAACCCCTAACTATGCTTTGAAGAGTCTGATTGCTTTGTGGTGTGAAAACAATGGTGTTGAGCTACCAAAAAAGCAAGGGAGCTGTAAAACAAAGAAATCTGGAAGCAGTCTTTCAGATTGTGATAGAGCTGCTATTAATGCTTTATTGGATAGGCTAGCAAATGGTGGTATGGAACAGCAAAGAGCTGCAGCTGGGGAGCTCCGATTGCTAGCAAAGAGGAATGCTGATAATAGAGTATGTATTGCTGAGGCAGGAGCAATACCGCTTCTTGTAGAGCTGCTGTCTTCCTCAGATCCTCGAACCCAGGAGCATGCTGTCACAGCACTTCTCAATCTGTCCATCAATGAGAGTAACAAAGGAACAATTGTAAATGCAGGAGCTATACCAGACATTGTGGATGTACTGAAAAATGGTAGTATGGAGGCCAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTATCGGTTCTAGATGAGAACAAGGTTGCAATAGGAGCAGCTGGGGCTATCCCTGCTTTGATTAGCTTGCTTTGTGAAGGCTCTCCTAGAGGTGGGATGGTGGATGAAGCACTAGCTATACTGGCAATTCTTGCAAGCCACCCCGAAGGTAGGACAGCTATTGGTCAAGCTGATCCAATTCCTATTCTAGTTGCGGTTATACGAACTGGTTCTCCACGGAACAGGGAGAATGCTGCTGCGGTGTTGTGGTCACTTTGCATGGGAGATCTTCTGCAATTGAAACTGGCAAGGGACCATGGTGCAGACGAAGCACTGCGGGAATTGTCAGAAAATGGCACTGACAGGGCCAAAAGGAAAGCAGGAAGTATATTAGAACTCTTGCAAAGAATGGAGGAGGATGATAGTTTGCTTAAATCTTAA 1779 0.4323 MSGNENSKAVAVDRLLASIKEISGLPECRNVCKRMYGNLVRRVKLLSPLFEEIKDSDCELLSDEHIRSFESLGNALGSAKSLLEFMNQGSKLYRALQRNEMVEKFQQINDQIEAEIRVLQYEKFEISEEVREQIELVHAQFKRANARTELADLQLDSDLAVAQKEKDPGPEILNRLSEKLHLKTINDLKKESAELHDLVITSGGELGDSIEMMSSLLKRLKNCVLNENPEVDPREGEKISMKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGNKTCPKTQQTLLHTALTPNYALKSLIALWCENNGVELPKKQGSCKTKKSGSSLSDCDRAAINALLDRLANGGMEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALISLLCEGSPRGGMVDEALAILAILASHPEGRTAIGQADPIPILVAVIRTGSPRNRENAAAVLWSLCMGDLLQLKLARDHGADEALRELSENGTDRAKRKAGSILELLQRMEEDDSLLKS 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00002 592 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Accr18g00002 592 FunFam RING-type E3 ubiquitin transferase 345 462 - -
Accr18g00002 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 321 IPR013083 -
Accr18g00002 592 SMART arm_5 457 499 IPR000225 GO:0005515
Accr18g00002 592 SMART arm_5 375 415 IPR000225 GO:0005515
Accr18g00002 592 SMART arm_5 416 456 IPR000225 GO:0005515
Accr18g00002 592 SMART arm_5 500 540 IPR000225 GO:0005515
Accr18g00002 592 CDD MLKL_NTD 15 142 - -
Accr18g00002 592 Gene3D - 483 590 IPR011989 -
Accr18g00002 592 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 507 IPR000225 GO:0005515
Accr18g00002 592 Gene3D - 336 482 IPR011989 -
Accr18g00002 592 FunFam RING-type E3 ubiquitin transferase 245 321 - -
Accr18g00002 592 ProSiteProfiles U-box domain profile. 247 321 IPR003613 GO:0004842|GO:0016567
Accr18g00002 592 CDD RING-Ubox_PUB 249 301 IPR045210 -
Accr18g00002 592 SUPERFAMILY RING/U-box 247 323 - -
Accr18g00002 592 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Accr18g00002 592 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Accr18g00002 592 SMART Ubox_2 251 314 IPR003613 GO:0004842|GO:0016567
Accr18g00002 592 Coils Coil 102 122 - -
Accr18g00002 592 Pfam U-box domain 248 318 IPR003613 GO:0004842|GO:0016567
Accr18g00002 592 Gene3D - 10 122 IPR036537 GO:0007166
Accr18g00002 592 PANTHER U BOX DOMAIN-CONTAINING 486 581 - -
Accr18g00002 592 SUPERFAMILY ARM repeat 342 579 IPR016024 -
Accr18g00002 592 FunFam RING-type E3 ubiquitin transferase 8 122 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00002 12 584 U-box Gene Family AT3G54850 61.827 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr18g00002 - - gmx:100797201 906.36