Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00001 ATGAGTGGGAATGAGAATTCCAAGGCCGTGGCGGTGGATCGATTGCTTGCTTCTATCAAGGAGATTTCGGGGTTACCTGAGTGTCGAAACGTTTGCAAGAGGATGTATGGGAATTTAGTTCGGAGGGTGAAGTTATTGAGCCCGTTGTTCGAGGAAATTAAGGATAGTGATTGTGAGTTGCTTAGCGACGAACATATTAGATCGTTTGAATCGCTGGGGAATGCTTTGGGTTCAGCTAAGAGCCTCCTCGAGTTCATGAACCAAGGGAGTAAGCTTTATCGGGCTTTGCAGAGGAATGAAATGGTAGAAAAGTTTCAACAAATAAATGACCAAATTGAAGCAGAAATTCGTGTACTTCAATATGAAAAGTTTGAAATATCAGAGGAAGTTCGAGAACAGATTGAACTTGTGCATGCTCAGTTTAAAAGAGCAAATGCTAGAACTGAATTAGCTGATTTACAACTAGATTCGGATTTAGCTGTGGCACAAAAAGAAAAAGACCCCGGTCCTGAAATACTCAATAGGCTTTCTGAGAAGTTGCATCTGAAGACTATAAATGACCTCAAGAAAGAATCAGCTGAATTGCATGACTTGGTGATCACAAGTGGTGGAGAACTAGGGGACTCTATTGAGATGATGTCATCTCTTCTTAAGAGACTGAAGAACTGTGTGCTCAATGAGAACCCTGAAGTTGACCCCCGTGAGGGTGAAAAAATTTCAATGAAGCACAGATCTCCTGTAATTCCTGATGATTTTAGATGTCCAATATCTCTTGAACTAATGAAAGATCCTGTAATTGTCTCTACTGGCCAGACATACGAAAGATCTTGCATTCAAAAATGGCTTGATGCTGGGAACAAAACATGTCCGAAGACACAGCAAACACTTTTGCACACAGCCTTAACCCCTAACTATGCTTTGAAGAGTCTGATTGCTTTGTGGTGTGAAAACAATGGTGTTGAGCTACCAAAAAAGCAAGGGAGCTGTAAAACAAAGAAATCTGGAAGCAGTCTTTCAGATTGTGATAGAGCTGCTATTAATGCTTTATTGGATAGGCTAGCAAATGGTGGTATGGAACAGCAAAGAGCTGCAGCTGGGGAGCTCCGATTGCTAGCAAAGAGGAATGCTGATAATAGAGTATGTATTGCTGAGGCAGGAGCAATACCGCTTCTTGTAGAGCTGCTGTCTTCCTCAGATCCTCGAACCCAGGAGCATGCTGTCACAGCACTTCTCAATCTGTCCATCAATGAGAGTAACAAAGGAACAATTGTAAATGCAGGAGCTATACCAGACATTGTGGATGTACTGAAAAATGGTAGTATGGAGGCCAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTATCGGTTCTAGATGAGAACAAGGTTGCAATAGGAGCAGCTGGGGCTATCCCTGCTTTGATTAGCTTGCTTTGTGAAGGCTCTCCTAGAGGTAAAAAGGATGCTGCTACAGCTATTTTTAACCTTTCTATCTATCAGGGAAACAAAGCTAGAGCTGTAAAGGCCGGGATAATAGCTCCACTAATGACATTTCTTATTGATGCTGGAGGTGGGATGGTGGATGAAGCACTAGCTATACTGGCAATTCTTGCAAGCCACCCCGAAGGTAGGACAGCTATTGGTCAAGCTGATCCAATTCCTATTCTAGTTGCGGTTATACGAACTGGTTCTCCACGGAACAGGGAGAATGCTGCTGCGGTGTTGTGGTCACTTTGCATGGGAGATCTTCTGCAATTGAAACTGGCAAGGGACCATGGTGCAGACGAAGCACTGCGGGAATTGTCAGAAAATGGCACTGACAGGGCCAAAAGGAAAGCAGGAAGTATATTAGAACTCTTGCAAAGAATGGAGGAGGATGATAGTTTGCTTAAATCTTAA 1896 0.4299 MSGNENSKAVAVDRLLASIKEISGLPECRNVCKRMYGNLVRRVKLLSPLFEEIKDSDCELLSDEHIRSFESLGNALGSAKSLLEFMNQGSKLYRALQRNEMVEKFQQINDQIEAEIRVLQYEKFEISEEVREQIELVHAQFKRANARTELADLQLDSDLAVAQKEKDPGPEILNRLSEKLHLKTINDLKKESAELHDLVITSGGELGDSIEMMSSLLKRLKNCVLNENPEVDPREGEKISMKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGNKTCPKTQQTLLHTALTPNYALKSLIALWCENNGVELPKKQGSCKTKKSGSSLSDCDRAAINALLDRLANGGMEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALISLLCEGSPRGKKDAATAIFNLSIYQGNKARAVKAGIIAPLMTFLIDAGGGMVDEALAILAILASHPEGRTAIGQADPIPILVAVIRTGSPRNRENAAAVLWSLCMGDLLQLKLARDHGADEALRELSENGTDRAKRKAGSILELLQRMEEDDSLLKS 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00001 631 Gene3D - 331 458 IPR011989 -
Accr18g00001 631 FunFam RING-type E3 ubiquitin transferase 245 321 - -
Accr18g00001 631 FunFam RING-type E3 ubiquitin transferase 345 462 - -
Accr18g00001 631 Gene3D - 459 626 IPR011989 -
Accr18g00001 631 SMART arm_5 539 579 IPR000225 GO:0005515
Accr18g00001 631 SMART arm_5 457 497 IPR000225 GO:0005515
Accr18g00001 631 SMART arm_5 375 415 IPR000225 GO:0005515
Accr18g00001 631 SMART arm_5 416 456 IPR000225 GO:0005515
Accr18g00001 631 SMART arm_5 498 538 IPR000225 GO:0005515
Accr18g00001 631 CDD MLKL_NTD 15 142 - -
Accr18g00001 631 FunFam RING-type E3 ubiquitin transferase 463 626 - -
Accr18g00001 631 FunFam RING-type E3 ubiquitin transferase 8 122 - -
Accr18g00001 631 ProSiteProfiles U-box domain profile. 247 321 IPR003613 GO:0004842|GO:0016567
Accr18g00001 631 Pfam U-box domain 248 318 IPR003613 GO:0004842|GO:0016567
Accr18g00001 631 CDD RING-Ubox_PUB 249 301 IPR045210 -
Accr18g00001 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Accr18g00001 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Accr18g00001 631 SMART Ubox_2 251 314 IPR003613 GO:0004842|GO:0016567
Accr18g00001 631 SUPERFAMILY RING/U-box 247 323 - -
Accr18g00001 631 Pfam Armadillo/beta-catenin-like repeat 458 496 IPR000225 GO:0005515
Accr18g00001 631 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Accr18g00001 631 Coils Coil 102 122 - -
Accr18g00001 631 Gene3D - 10 122 IPR036537 GO:0007166
Accr18g00001 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 321 IPR013083 -
Accr18g00001 631 SUPERFAMILY ARM repeat 345 619 IPR016024 -
Accr18g00001 631 PANTHER U BOX DOMAIN-CONTAINING 34 620 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00001 12 623 U-box Gene Family AT3G54850 66.721 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr18g00001 - - gmx:100797201 993.03