Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr17g00046 ATGAGCATGTTAGGCCTGCGAGACCTACTTCTCATAGCTCCAAATCCTTCTTCTCTTCACCACCATCACCACCACCACCAGCAACAGCAGCAGCAACAACAACCACCTCAACAGGACCATTCAAGCCTTCATCCTCTTCCTTCTTCTGCTTCTCTGAGCGTCGGTCTGGGAATTTTCCCTCTCCTCACTGCAACTCCTTGCGTTCCTAATGACCTCCCTCACGATTCAGCGGATCACAATCACCAGAATACGGCGAGCAATTCCAATTTCTGGAACCTCAAGATGTGTCCTGCGGAAGTTCCGAATTCTTCCAAGAAAGGAGTGATCGATGTAGAAGGCGAAGAGAATGGGATTTTTGGGGGTGATTTTAGGGTCTGTCAGGATTGTGGGAATCGCGCCAAGAAAGATTGTGGGTATAGACGATGCAGGACTTGTTGTAAAGGACGTGGCTACGATTGTAGCACTCATATCAAGAGCACGTGGGTCCCCGCCGCTCGCCGCCGTGAGCGCCAGATGACCGTTCTTGCCGCAGCCGGAAGTGGCGGTGGTGGTTCTGGGTCGCCTCCCGGGTCTAAGAGGCCTAGAGCGTTTGGGTCGTCACAGAATGCTGCTACCACTTCTCATAGTTCTGCCTCCAACGCTACTACGCCAAGAAGCTTAGATACTACCTCTTGTCACCAAGATGCTAGCTTCAAACAGTCTTTACCAGGTCATGTTCGTGCCCCTGCAGTATTCAGGTGCCATAGAGTGTCAGCTATTGGTAATGGTGAAGATGAGTTTGCGTACATGGCCACAGTCCATATCAGTGGCCATGTTTTCAAGGGGTTTCTGTATGATCAAGGTGCTGATGGGAAAAGCGCAATCCCATGTGTTTCGGAACTTCAACTGGGAAATTATAGCAGTGAAAAGAATAGAGAATGTTCTCCTCCAATTGGGGTTCTTCCAACTAGTAATGCCTACCCTGCTTCTGGCTGTTGA 978 0.501 MSMLGLRDLLLIAPNPSSLHHHHHHHQQQQQQQQPPQQDHSSLHPLPSSASLSVGLGIFPLLTATPCVPNDLPHDSADHNHQNTASNSNFWNLKMCPAEVPNSSKKGVIDVEGEENGIFGGDFRVCQDCGNRAKKDCGYRRCRTCCKGRGYDCSTHIKSTWVPAARRRERQMTVLAAAGSGGGGSGSPPGSKRPRAFGSSQNAATTSHSSASNATTPRSLDTTSCHQDASFKQSLPGHVRAPAVFRCHRVSAIGNGEDEFAYMATVHISGHVFKGFLYDQGADGKSAIPCVSELQLGNYSSEKNRECSPPIGVLPTSNAYPASGC 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr17g00046 325 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 25 306 IPR007818 GO:0003700|GO:0006355
Accr17g00046 325 NCBIfam LRP1 C-terminal domain 235 281 IPR006511 -
Accr17g00046 325 MobiDBLite consensus disorder prediction 177 227 - -
Accr17g00046 325 MobiDBLite consensus disorder prediction 194 227 - -
Accr17g00046 325 MobiDBLite consensus disorder prediction 29 47 - -
Accr17g00046 325 NCBIfam putative zinc finger domain, LRP1 type 125 167 IPR006510 -
Accr17g00046 325 Pfam Domain of unknown function (DUF702) 125 283 - -
Accr17g00046 325 MobiDBLite consensus disorder prediction 16 47 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr17g00046 1 304 C2H2 Transcription Factor Family AT5G12330 40.498 4.51e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Accr17g00046 DUF702 6.2e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr17g00046 - - gmx:100805228 394.43