Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr17g00003 ATGAAGTGCTTTTACTATTTCAAAGATAAATACAAGAGCAGAGGACAAAGATCAGCACCTGTGCTGAAAGAGCAAGAGAAATCTCAGTTTTCAGAAGCTGATAGAATCACCAGATCTGCATGTTCTACAGCCTCCAGTCGTGGTATACCAGAATTGTATGAGGAGAGGGCTCATAATTTGCGGGTTTTCTCGTTTACGGAGCTCAGGCGTGCCACAAGTGATTTCAATAGGCTTTTTAAGATAGGGGAAGGTGGATTTGGGAGTGTATATAAAGGTTCTATTCAGCCACTTGATGGAAAAGGAGATTCTATTTTAGTTGCCATCAAAAAGCTGAATAAGGATGGATTACAGGGGCATAAACAATGGTTGACTGAAGTTCAGTTTCTTGGTGTTGTGGAGCACCCCAATCTGGTCAAACTCATTGGATACTGTGCAGTGGATGGCGAAAGAGGGATTCAAAGACTACTTGTATATGAATATATGCCAAATAAAAGCTTAGAACACCATCTTTTTCATAGGGCATATGATCCTCTTACTTGGAGAACAAGACTCGAAATACTACTTGGAGCAGCTCAAGGCTTAGTGTATTTGCATGATGAATCAGAAGTTCAGGTGATATACCGAGATTTTAAATGTTCAAACGTGTTATTGGATGAAAACTTCAAGCCAAAACTTTCTGATTTTGGACTCGCTAGAGAGGGCCCAATTGCTGGCAATACTCATGTTTCAACTGCGGTGGTCGGTACATTCGGGTACGCTGCTCCAGATTATGTTGAGACGGGCCATCTCACTACAAAGAGTGATGTGTGGAGTTTTGGTGTGGTTCTGTATGAAGTTCTTACAGGCAGGCGTTCCCTGGAGCGAAACCGGCCAAAAATGGAGCAGAAACTCTTGGAGTGGGTGAAACACTACCCTGCTGACAGTAAAAAATTCAGCTTGATTATGGATCCACGACTTGAAGGGCTATATTCTCACAACACAGCGCGAAAAGTTGCCAAGCTTGCTGACATTTGCCTTAGCAAGAGCGCGAAAGAGAGGCCGACAATGAGTCAGGTGGTGGAGAGATTGAAGGAGATAATCCAAGCTTCAAATGAAGAACATGTTTCTGAGACAAGCCTTGAAGTATCCGAAAGTGACCCGCCCAACCCAGTAGAAAAGCCAGACCAATCTGGACCTTCAGAATTGTATAAAAGGAGGATGGCTCATCTTGCAAAGCTTGGTGAACATGTTGAGAGTGATAGTAGAAGGAGATTTATGATCCTGCAGAAAGCTAAAGTCTTTTGA 1284 0.4291 MKCFYYFKDKYKSRGQRSAPVLKEQEKSQFSEADRITRSACSTASSRGIPELYEERAHNLRVFSFTELRRATSDFNRLFKIGEGGFGSVYKGSIQPLDGKGDSILVAIKKLNKDGLQGHKQWLTEVQFLGVVEHPNLVKLIGYCAVDGERGIQRLLVYEYMPNKSLEHHLFHRAYDPLTWRTRLEILLGAAQGLVYLHDESEVQVIYRDFKCSNVLLDENFKPKLSDFGLAREGPIAGNTHVSTAVVGTFGYAAPDYVETGHLTTKSDVWSFGVVLYEVLTGRRSLERNRPKMEQKLLEWVKHYPADSKKFSLIMDPRLEGLYSHNTARKVAKLADICLSKSAKERPTMSQVVERLKEIIQASNEEHVSETSLEVSESDPPNPVEKPDQSGPSELYKRRMAHLAKLGEHVESDSRRRFMILQKAKVF 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr17g00003 427 PANTHER OS01G0588500 PROTEIN-RELATED 36 359 - -
Accr17g00003 427 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 161 370 - -
Accr17g00003 427 Gene3D Transferase(Phosphotransferase) domain 1 161 379 - -
Accr17g00003 427 Pfam Protein tyrosine and serine/threonine kinase 80 356 IPR001245 GO:0004672|GO:0006468
Accr17g00003 427 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr17g00003 427 CDD STKc_IRAK 81 359 - -
Accr17g00003 427 MobiDBLite consensus disorder prediction 364 396 - -
Accr17g00003 427 SUPERFAMILY Protein kinase-like (PK-like) 57 356 IPR011009 -
Accr17g00003 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Accr17g00003 427 ProSitePatterns Protein kinases ATP-binding region signature. 81 110 IPR017441 GO:0005524
Accr17g00003 427 Gene3D Phosphorylase Kinase; domain 1 49 160 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr17g00003 61 415 Glycoside Hydrolase AT3G07070 45.278 3.92e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Accr17g00003 PK_Tyr_Ser-Thr 6.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr17g00003 - - vvo:131617993 665.225