Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr16g00222 ATGTCTGCAAATTCTGAGGGATCTTCATCTGCATTAAATCGGTCTAATTCTCAGGTTTTTGAGGACACTGCCCAGCTAGTTGACCATTCTGCCCGGACTGCAGTATGTGCTCTCTGCCAAAGGGCTCTATCACCTGATATTGAGATAACGAATGATCTTGCACCCATTGGTGTATGTGGTGATTGTAAATTTTTATTACTTGAAGATATTGGGACCCGTTCCCAAAACTCTCAAAGAATGCATAGAGGAAGATCCAGGTACAGCAGTTTTGAATCAATTGAGAATGTTTTACCACATCAGCTCCCCAGCATGGCTAATTCTGTGAGACAAAATCAATCCTTTGCATCTGTGGAGGATGATCAACTTGGTGATGGTGATACCCCCTCTTGGTTGTTGCAGTATGCTAGTACTCACACCACCCCTAGCGAGTCTCGAAGATGGAGGCGGGTTTTCTCTGATACTGATAGTGATGGTTTTGATAATTGGAGTTCTCTTTATGGTGAAAATGAATCAAATGCAAGTATTAGGTGCTACAGGGTCACCAATGGCGAGACTGATTCCTTCTCTTTCAGTGCTTATGGTGGTGACTCTGAGGCATCTATGGATAGATATAGTTTTGTAGGCACAGGAATATTAAATATACCAGATGAGGATGATGAGTTTGATAGTGACACTGATATAGATCCAATGCATGCTGGCCTTAGCCATTGGAATTCTGATGATATGGAAGGGGAAGGTGAGGAAGAGGAAGAGGAGGAAGAGGAAAGAGAATGGGAAGTAGCTGAGGCTGAGGAAGCTGAAGCTACTGCCCGCCGTCAAATATTTTTTACTTCAAGTCCCAATGAGAGAAGTGACCCCATTAATTGGGGTCCACGGTTTCATTTTCCTGAATCTGAGGAAATATTAAGTAGGAGAGTTGGGGATACATGGCAAACTTACACTGATCAAAGCTCCAATTACTTGGAGGAGGCACATTCACCTCCTTATGGTGCAAATTTTGGGGCTAATCTTGATGCTAGACAATTTGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAACTCAAGACGAGGAGCACCTCCTGCAGCAGTGTCTTTTGTACATAGTCTTCCCTGTGTTGTTATAAGCAAAGAACATGAGAAGCATGATGAACTTGTATGTGCCATTTGCAAGGATGTCTTGGCCATAGGCACTGAAGTAAATCAACTTCCCTGCTCTCACCTTTATCATACCTGCTGCATTTTGCCATGGCTGAGTGCACGAAATTCATGCCCCCTTTGTCGTTATGAGCTCCCAACAGATGATAAGGATTATGAGGAAGAAAAGCGCAATATTGACATTAGAAATGAGATCCTTGAAGTGCAGCAGCTAAATTTGATGGATGGCAATTCTTCTGACGGATCTGAAGCAAATGAAGAGGATGGCACTAATCAAGGTGGGGGACAGCATGTTGAGCTTGTGAATATGGTTCCCGTAGATAATCCTTCTGCAGTGAGTGGCAGTAGAGGAAGATGGTTTTTCTTTGCTGCTGCTCCAATTGTTAGCCTAGTGGGTATTGTTATTGTCTTATGGTTAGGCAACCCTCTAATTGAGCGTAGTAGACAACTGGGCTGCCACAACTTACAGGGGCCAAATCAGCATCAGATTCATGTTTCCGCCTCACCCAACCACAGGGAGAATAGAAGCAGAAGGTGGTGGTGTTTTTTCTAG 1710 0.4368 MSANSEGSSSALNRSNSQVFEDTAQLVDHSARTAVCALCQRALSPDIEITNDLAPIGVCGDCKFLLLEDIGTRSQNSQRMHRGRSRYSSFESIENVLPHQLPSMANSVRQNQSFASVEDDQLGDGDTPSWLLQYASTHTTPSESRRWRRVFSDTDSDGFDNWSSLYGENESNASIRCYRVTNGETDSFSFSAYGGDSEASMDRYSFVGTGILNIPDEDDEFDSDTDIDPMHAGLSHWNSDDMEGEGEEEEEEEEEREWEVAEAEEAEATARRQIFFTSSPNERSDPINWGPRFHFPESEEILSRRVGDTWQTYTDQSSNYLEEAHSPPYGANFGANLDARQFEDLLEHLAENDNSRRGAPPAAVSFVHSLPCVVISKEHEKHDELVCAICKDVLAIGTEVNQLPCSHLYHTCCILPWLSARNSCPLCRYELPTDDKDYEEEKRNIDIRNEILEVQQLNLMDGNSSDGSEANEEDGTNQGGGQHVELVNMVPVDNPSAVSGSRGRWFFFAAAPIVSLVGIVIVLWLGNPLIERSRQLGCHNLQGPNQHQIHVSASPNHRENRSRRWWCFF 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr16g00222 569 SUPERFAMILY RING/U-box 369 434 - -
Accr16g00222 569 MobiDBLite consensus disorder prediction 242 256 - -
Accr16g00222 569 SMART ring_2 387 427 IPR001841 -
Accr16g00222 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 434 IPR013083 -
Accr16g00222 569 Pfam Ring finger domain 387 428 IPR001841 -
Accr16g00222 569 FunFam E3 ubiquitin-protein ligase RING1-like 348 434 - -
Accr16g00222 569 ProSiteProfiles Zinc finger RING-type profile. 387 428 IPR001841 -
Accr16g00222 569 MobiDBLite consensus disorder prediction 462 482 - -
Accr16g00222 569 MobiDBLite consensus disorder prediction 218 256 - -
Accr16g00222 569 Coils Coil 246 269 - -
Accr16g00222 569 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 267 432 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr16g00222 29 569 C3H Transcription Factor Family AT5G01980 40.687 8.95e-115 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr16g00222 - - gmx:100797923 666.766