Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr16g00066 ATGGCTTCTAGTCCTCGCACAGTGGGGGATATCTTCAAGGATTATAGTGCTCGAAAAGATGGAATTCTTCGTGCTTTAACTGATGATGTTCATGACTTTTATCGGCTCTGTGATCCAGGTAAGAAGAGCTTGTCCCTTTATGGATATGTGGACAAAACCTGGAAAGTAACTGTGCCAACAGAGGGACTCCTACATGATATTCCGGAGCCAGCTGTTGGAATCAATCATTCTAAAGAACTCATGCCACCCAATGAATGGCTTTCTGTGGTTGCTGACTTGAGTGATTCATGGTTGCTTTCGGTAGCTTTTTATCGTGCCCGTCTTAACCCCGATGAAAGGGAACAGTTATTCAACTTGATCAACACTGATCCCACTGTTTTTGAAGTTGTGACTAAGAAGAACCCGTTAAAGGACAAGGCCACTGTGGAAAGTAGTAGCAAGCCTCGGGCCGGCGCCAAGAGAACAAGCGACAGGCAAGTGAAAAGCAACCCAAAGGTTTCTGATGAAGGTTACAAGGTGGAAGAAGACGATCAAAGCGGAAAACCTTGCGGTAGCTGTGGTGGAAATAAGGATTCAGGTGAAGCTTGGATTGAATGCGATATGTGCATGGAATGGTTCCACGAGAAATGTGTGCGGATTATTACTTCAAAGTTTGGGATCCTAAAGCAATACAAATGCCCATTATTTAATGTGACGGGAGGTAGGCCTTAG 711 0.4473 MASSPRTVGDIFKDYSARKDGILRALTDDVHDFYRLCDPGKKSLSLYGYVDKTWKVTVPTEGLLHDIPEPAVGINHSKELMPPNEWLSVVADLSDSWLLSVAFYRARLNPDEREQLFNLINTDPTVFEVVTKKNPLKDKATVESSSKPRAGAKRTSDRQVKSNPKVSDEGYKVEEDDQSGKPCGSCGGNKDSGEAWIECDMCMEWFHEKCVRIITSKFGILKQYKCPLFNVTGGRP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr16g00066 236 SUPERFAMILY FYVE/PHD zinc finger 174 227 IPR011011 -
Accr16g00066 236 MobiDBLite consensus disorder prediction 138 179 - -
Accr16g00066 236 Pfam Alfin 7 131 IPR021998 GO:0006355|GO:0042393
Accr16g00066 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 230 IPR013083 -
Accr16g00066 236 SMART PHD_3 182 230 IPR001965 -
Accr16g00066 236 MobiDBLite consensus disorder prediction 138 186 - -
Accr16g00066 236 PANTHER CPG BINDING PROTEIN 4 230 IPR045104 GO:0006355|GO:0042393
Accr16g00066 236 Pfam PHD-finger 183 227 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr16g00066 2 235 Alfin-like Transcription Factor Family AT5G05610 50.000 1.93e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr16g00066 Alfin 6.2e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr16g00066 K26274 - qsa:O6P43_026231 288.115