Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr16g00064 ATGTTTCGTAAACATGACAACGTGGAGGATATCTTCAACGATTATAGTGCTCGAAAAGCAGGAGTTGTTCGTGCTTTAACTCATGATGTTGATAAATTTTATGCGCTCTGTGATCCAGATAGGGAGAACTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCCGCCACCAGAGGACGTTCCACCTAAGATTCCTGAGCCGGTTCTTGGAATCAATTTTACTAGAGATGGCATGCAACGCAGGGATTGGCTTTCTCTGGTTGCTGTCTTCAGCGATTCATGGTTGCTTTCTCTGGCTTTTTATCTTGGAGCCTCTCTTAACCGCAATGAAAGGGAACGGTTATTCAAGTTCATCAATGCTCATCCCACTGTTTTTGAAGTCGTGACTGAGAAGAACCCCTTAAAGGACAAGGCCACTGTGGACAGTAGTAGCAAGCCCCGGGGCGGCACTAAGAGAACGAGCGACGGGCAAGTGAAAAGCAACCCAAACTTTTCCGATGAAGGTTACAAGGAGGATCATAGCGAAAGCATTTGCGGTGGCTGTGGTGGAAATAATGAATCAGATGAATTTTGGATTGCCTGCGATAGCTGCGAGAAATGGTTCCACGGGAAATGTGTGATAATTACTCCTGCAATGGCTGACAGCATAGACCAATACGAATGCCCATCATGTAGCATGAGGCGAGTAAGCCTTAGTTAG 708 0.4576 MFRKHDNVEDIFNDYSARKAGVVRALTHDVDKFYALCDPDRENLCLYGHPNETWEVTPPPEDVPPKIPEPVLGINFTRDGMQRRDWLSLVAVFSDSWLLSLAFYLGASLNRNERERLFKFINAHPTVFEVVTEKNPLKDKATVDSSSKPRGGTKRTSDGQVKSNPNFSDEGYKEDHSESICGGCGGNNESDEFWIACDSCEKWFHGKCVIITPAMADSIDQYECPSCSMRRVSLS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr16g00064 235 ProSiteProfiles Zinc finger PHD-type profile. 178 230 IPR019787 -
Accr16g00064 235 Pfam Alfin 8 132 IPR021998 GO:0006355|GO:0042393
Accr16g00064 235 PANTHER CPG BINDING PROTEIN 6 232 IPR045104 GO:0006355|GO:0042393
Accr16g00064 235 Pfam PHD-finger 180 228 IPR019787 -
Accr16g00064 235 SMART PHD_3 180 228 IPR001965 -
Accr16g00064 235 ProSitePatterns Zinc finger PHD-type signature. 181 227 IPR019786 -
Accr16g00064 235 MobiDBLite consensus disorder prediction 146 167 - -
Accr16g00064 235 MobiDBLite consensus disorder prediction 139 174 - -
Accr16g00064 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 228 IPR013083 -
Accr16g00064 235 SUPERFAMILY FYVE/PHD zinc finger 174 231 IPR011011 -
Accr16g00064 235 FunFam PHD finger alfin-like protein 173 229 - -
Accr16g00064 235 CDD PHD_AL_plant 181 230 IPR044104 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr16g00064 8 231 Alfin-like Transcription Factor Family AT5G05610 62.281 2.10e-95 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr16g00064 Alfin 1.1e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr16g00064 K26274 - qsa:O6P43_026231 370.548