Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr16g00063 ATGTCTCTTAGATGTTACTCCGTGGAGGATATCGTCAAGGATTATAGTGCTCGAAAAGCAGGGGTTGTTCGTGCTTTAACTCATGATGTTGATCAATTTTATGGGCTCTGTGATCCAGATAGGGAGAACTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCCGCCACCAGAGGACGTTCCACCTAAGATTCCTGAGCCAGTTCTTGGAATCAATTTTACTAGAGATGGCATGCAACGCAGGGATTGGCTTTCTCTGGTTGCTGTCTTCAGCGATTCATGGTTGCTTTCTCTGGCTTTTTATCTTGGAGCCTCTCTTAACCGCAATGAAAGGGAACGGTTATTCAAGTTGATCAATGGTCATCCCACTATTTTTGAAGTTGTGATTGAGAAGAACCCATTAAAGGACAAGCCCACTGTGGACAGTAGTAGTAAACCTCGGGGCGGCACTAAGAGAACAACTGACGGGCAAGTGAAAAGCAACCCAAAGTTTTCTGATGAAGGTTACAAAGTGCAAGAAGATGATCATAGCGAAACCCTTTGCGGTAGCTGTGGTGGAAAAAATGATTCAGATGAAGGTTGGATTGGCTGCGATAACTGCGAGAAATGGTTCCACGAGAAATGTGTGCAAATTACTCCTATTATGGCTGCGAGCTTAAAGCGATACAAATGCCCATCATGTAGCATGGGGCGAGGTAGGCCTTAG 714 0.4482 MSLRCYSVEDIVKDYSARKAGVVRALTHDVDQFYGLCDPDRENLCLYGHPNETWEVTPPPEDVPPKIPEPVLGINFTRDGMQRRDWLSLVAVFSDSWLLSLAFYLGASLNRNERERLFKLINGHPTIFEVVIEKNPLKDKPTVDSSSKPRGGTKRTTDGQVKSNPKFSDEGYKVQEDDHSETLCGSCGGKNDSDEGWIGCDNCEKWFHEKCVQITPIMAASLKRYKCPSCSMGRGRP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr16g00063 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 231 IPR013083 -
Accr16g00063 237 SUPERFAMILY FYVE/PHD zinc finger 175 234 IPR011011 -
Accr16g00063 237 MobiDBLite consensus disorder prediction 138 173 - -
Accr16g00063 237 Pfam PHD-finger 184 231 IPR019787 -
Accr16g00063 237 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Accr16g00063 237 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Accr16g00063 237 PANTHER CPG BINDING PROTEIN 7 234 IPR045104 GO:0006355|GO:0042393
Accr16g00063 237 SMART PHD_3 183 231 IPR001965 -
Accr16g00063 237 MobiDBLite consensus disorder prediction 146 164 - -
Accr16g00063 237 FunFam PHD finger alfin-like protein 176 232 - -
Accr16g00063 237 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr16g00063 7 236 Alfin-like Transcription Factor Family AT5G05610 62.771 5.78e-96 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr16g00063 Alfin 2.5e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr16g00063 K26274 - qsa:O6P43_026231 382.874