Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr16g00061 ATGGCTACTTATTATCCTCGCACCGTGGAGGAGATCTTCAAGGATTATAGTGCTCGAAGAGAAGGAGTTGTTCGTGCTTTAACTCATGATGTTCATAAATTTTATCGGCAATGTGATCCAGATAAGGACAACTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCTGCCACCAGCGTTCCTCCCGCATGATATTCCCGAGCCAGCTCTTGGAATCAATTTTGCTAGACAAGGCATGCAACCCAAGGACTGGCTTTCTCTGGTTGCTGCCCACAGCGATTCATGGTTGCATTCCGTGGCCTTTTATTTTGGAGCCCTTCTTAACCGCGATGAAAGGGAACAGTTATTCAAGTTGATCAACGCTGATCCCACTGTTTTTGAAGTTGTGACTGAGAAGAACCCGTTGAAGGACAAGGCCACTGTGGAAAGTAGTAGCAAGCCCCGGGGCGGCACCAAGAGAACAAGCGGCGGGCAAGTGAAAAACAGCCCAGACTTTTATGATGAAGGTTATGAGGAGGATCATAGTGAAAGCATTTGCGGTATCTGTGAAAATAATGATTCGGATGACGCTTGGATTAGCTGCGATAGCTGCAGCAACAAATGGTTCCACGAGAAATGTGTGAAATCTATTCCTATAATGTCTACGATGTTAAAGCGATACAACTGCCCATCATGTAGCCCCATGAGGCGAGGTAGGCCTTAG 711 0.4627 MATYYPRTVEEIFKDYSARREGVVRALTHDVHKFYRQCDPDKDNLCLYGHPNETWEVTLPPAFLPHDIPEPALGINFARQGMQPKDWLSLVAAHSDSWLHSVAFYFGALLNRDEREQLFKLINADPTVFEVVTEKNPLKDKATVESSSKPRGGTKRTSGGQVKNSPDFYDEGYEEDHSESICGICENNDSDDAWISCDSCSNKWFHEKCVKSIPIMSTMLKRYNCPSCSPMRRGRP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr16g00061 236 SMART PHD_3 181 229 IPR001965 -
Accr16g00061 236 MobiDBLite consensus disorder prediction 147 164 - -
Accr16g00061 236 Pfam PHD-finger 181 230 IPR019787 -
Accr16g00061 236 SUPERFAMILY FYVE/PHD zinc finger 174 232 IPR011011 -
Accr16g00061 236 ProSitePatterns Zinc finger PHD-type signature. 182 228 IPR019786 -
Accr16g00061 236 CDD PHD_TCF19_like 182 228 - -
Accr16g00061 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 229 IPR013083 -
Accr16g00061 236 MobiDBLite consensus disorder prediction 139 169 - -
Accr16g00061 236 Pfam Alfin 8 133 IPR021998 GO:0006355|GO:0042393
Accr16g00061 236 ProSiteProfiles Zinc finger RING-type profile. 182 229 IPR001841 -
Accr16g00061 236 PANTHER CPG BINDING PROTEIN 5 232 IPR045104 GO:0006355|GO:0042393
Accr16g00061 236 ProSiteProfiles Zinc finger PHD-type profile. 179 231 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr16g00061 6 235 Alfin-like Transcription Factor Family AT5G05610 56.170 4.30e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr16g00061 Alfin 6.4e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr16g00061 K26274 - qsa:O6P43_026231 326.25