LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr16g00056	ATGGCGGACTCACATTCCGCTACATTTCAACCTCCTACTGTTGCTTCATCTTCATCTTCTTCTACAGCCATTCAAGATCCTTCTGGAGCTACTACTTCGTCGACTGCAGGATCTTCACGAGTACGCCGTCGCCAAGAGGAAAGTCGAAGTCATCATCCTCGTTCTCAATCCTCTGGCCTAGAGCCGCAGAATTTGAGCGTCATCAATTGGACATATCAAAATGCGTCTTCAATGTCTAGAGATGATTCTTGGTCATGCCTCGTTGTTCTTTTCACCTTTTGGTTCTTCGTGTCGATGACTATGGTACTTGGAGTTTACGGGTCAATGAACCTCCTGCTTAGTCCAAGCGCTTCCATTCTTCTCCAACCTAACCCCTTATTCGTGCAATCTATAAAGGTAGAAAACTTAGGATCAAAGCCTGGAGTCATGCTCTATGGTACATACGGAATCCCCTCTCTTGATGTTTTTACTGTTTGGACAGAAACTCGTAATGTAACTATTCCATCTGATGTGCATAAGGAATGGAAATATTACCTGAATGAAGGGTCTCAAGTAAACATTTCTTACCGCATGAGATCTGAGAACCCTTCTATTGTTCTTGTAATTGCCGATGGGGAAGACGGCCTCTCTCAGTGGCTGGATTATCCATCATATCCTAATAGCACACTCTCGTGGAACATAATCCAAGGAACTGGTATGATTACGCAGTACATATTCCGTTCATCGTACTACTATTTGGCACTAGGAAATCTGGATGATGAGGAGGCAGCAGAGGTGGACCTGATCATCAGAGTAAGGGCTGCCATGTATAATACAACAGATGCTTATTACAAATGCACTTTGACTAGTGAGCCATGCGGTTTGAATGTTTTCTTTCCTGATGGGAATGCAGCTATCCTAACATCTCCTGTACCACAACAGAACACATCCAGTAATCAGTGGTATGTCAAATTGTCCTATGGACCAAGATGGGTCACATATATTTTTGGCATGGGTGGATTGACTTTGCTTATATTTTTGGCCTTCAACTGCTTTAACAAGCTGCAATATCCTCAAGAAGATAGAAATGAGGGAACAGCACCTCAAAGAGTCCCTTTGCTTTCTCACAAAGATGATGATGTTTCCAGCTGGGGTTCATCATATGATTCCGTGTCACAAGATGAGGAGGATCTTGACCTTCTCATTGGGGATTCCATCAATGGGAAGTCTTTAGCTGATGGTGAAACCAGTAACAATACAAGGCGCCTTTGTGCAATATGCTTTGATGCTCCAAGGGACTGCTTCTTCCTTCCTTGTGGACATTGCGTGGCTTGTTTTGAATGTGCAACAAGGATAGCAGAGGCAGAGGGTACTTGCCCTGTATGTCGTAGGAGCATGAAGAAGGTGAGGAAGATATTTACTGTTTAA	1407	0.4357	MADSHSATFQPPTVASSSSSSTAIQDPSGATTSSTAGSSRVRRRQEESRSHHPRSQSSGLEPQNLSVINWTYQNASSMSRDDSWSCLVVLFTFWFFVSMTMVLGVYGSMNLLLSPSASILLQPNPLFVQSIKVENLGSKPGVMLYGTYGIPSLDVFTVWTETRNVTIPSDVHKEWKYYLNEGSQVNISYRMRSENPSIVLVIADGEDGLSQWLDYPSYPNSTLSWNIIQGTGMITQYIFRSSYYYLALGNLDDEEAAEVDLIIRVRAAMYNTTDAYYKCTLTSEPCGLNVFFPDGNAAILTSPVPQQNTSSNQWYVKLSYGPRWVTYIFGMGGLTLLIFLAFNCFNKLQYPQEDRNEGTAPQRVPLLSHKDDDVSSWGSSYDSVSQDEEDLDLLIGDSINGKSLADGETSNNTRRLCAICFDAPRDCFFLPCGHCVACFECATRIAEAEGTCPVCRRSMKKVRKIFTV	468

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr16g00056	468	FunFam	E3 ubiquitin-protein ligase APD2	406	467	-	-
	Accr16g00056	468	ProSiteProfiles	Zinc finger RING-type profile.	417	456	IPR001841	-
	Accr16g00056	468	Pfam	Domain of unknown function (DUF4792)	142	209	IPR032008	-
	Accr16g00056	468	Pfam	Domain of unknown function (DUF4793)	234	340	IPR032010	-
	Accr16g00056	468	MobiDBLite	consensus disorder prediction	1	61	-	-
	Accr16g00056	468	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	401	468	IPR013083	-
	Accr16g00056	468	Pfam	Zinc finger, C3HC4 type (RING finger)	414	462	-	-
	Accr16g00056	468	MobiDBLite	consensus disorder prediction	1	39	-	-
	Accr16g00056	468	PANTHER	OS05G0521000 PROTEIN	56	468	-	-
	Accr16g00056	468	SMART	ring_2	417	455	IPR001841	-
	Accr16g00056	468	MobiDBLite	consensus disorder prediction	40	54	-	-
	Accr16g00056	468	SUPERFAMILY	RING/U-box	416	462	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr16g00056	390	465	C3H Transcription Factor Family	AT3G06140	28.947	2.25e-06	47.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr16g00056	-		-	tpra:123891971	562.377