Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr16g00040 ATGAAGAGTGGCAAAGGGAAGGGAGCAGTCAAGAACTCCAAGGAATCATTGAAGCCTGTCGATGACAGAAGGGTTGGAAAGCGAAAGGCTGCGGCTAAACCTGACAAAAGTAATAAACGGCAGGCCAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCACCCAGTGCTTTCTTTGTCTTCCTTGAGGAGTTCAGAGCAACCTTTAAGAAAGAAAATCCTAATGTGAAGGCAGTATCAGCTGTTGGGAAAGCTGGAGGACAGAAATGGAAATCCATGTCTGAGGCTGAGAAAGCTCCTTATGAAGCCAAGGCTGCAAAAAGGAAAACTGAGTATGAAAAACTTATGAATGCTTATAATAAAAAGCAGGCAAGCACAGCGGAAGATGGAGGTGATGAATCGGACAGGTCCAAATCTGAAATCAACGATGAAGATGAAGAGGAGGCACACCAAGAGGAGGAGGAGGATGATGATGATGAAGAGGACGACGACGATGAGGAGGACGATGACTGA 513 0.4561 MKSGKGKGAVKNSKESLKPVDDRRVGKRKAAAKPDKSNKRQAKAKKDPNKPKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAGGQKWKSMSEAEKAPYEAKAAKRKTEYEKLMNAYNKKQASTAEDGGDESDRSKSEINDEDEEEAHQEEEEDDDDEEDDDDEEDDD 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr16g00040 170 SMART hmgende2 50 121 IPR009071 -
Accr16g00040 170 MobiDBLite consensus disorder prediction 82 170 - -
Accr16g00040 170 Pfam HMG (high mobility group) box 51 120 IPR009071 -
Accr16g00040 170 Gene3D High mobility group box domain 34 135 IPR036910 -
Accr16g00040 170 SUPERFAMILY HMG-box 37 121 IPR036910 -
Accr16g00040 170 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 51 120 IPR009071 -
Accr16g00040 170 MobiDBLite consensus disorder prediction 8 52 - -
Accr16g00040 170 MobiDBLite consensus disorder prediction 95 116 - -
Accr16g00040 170 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 154 IPR031061 -
Accr16g00040 170 CDD HMG-box_AtHMGB1-like 52 112 - -
Accr16g00040 170 MobiDBLite consensus disorder prediction 1 55 - -
Accr16g00040 170 Coils Coil 142 162 - -
Accr16g00040 170 MobiDBLite consensus disorder prediction 139 170 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Accr16g00040 HMG_box 2.4e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr16g00040 K25507 - mof:131167286 230.72