Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr16g00030 ATGATTGGAAATTGCTTCGGTGCCTTGAATTGGTGTACACCAAGATGGAGGAATTATTCTGATGATCGGTCACGCGAACAAGTGATATCAACCAGAAAGTTTAGTTATAATTCTTTGAGATCAGCAACAGAAGACTTTCATCCATCCAACAGAATTGGTCGAGGAGGTTATGGTGTTGTCTACAAGGGAGTTTTACGGGATGGAACTCAAGTTGCTATCAAGTGTCTTTCTGTAGAGTCTAAACAAGGAGCAAGAGAATTTATGACAGAAATTGATATGATATCAAATATAAGACATCCAAACCTGGTGCAACTAGTTGGCTGCTGTATAGAGGACAACCATCGCATATTGGTCTACGAATTTCTGGAAAACAATAGCCTTGCAAGCTTTTTGCTTGGTTCCAAAAGTAAATGTGTTGCTCTAAATTGGCCAAAAAGGGCTTCCATTTGCCGTGGTACTGCTTCTGCTCTTGCGTTTCTTCACGACGAGGTTCAGCCAAATATTGTTCATAGAGATATAAAGGCTAGCAACATACTACTTGATGGAAACTTCGATCCTAAAATAGGGGACTTTGGCCTCGCGAAACTTTTTCCCGACAATGTCACCCATCTGAGTACACGAGTGGCTGGAACTGTGGGATATCTTGCACCAGAATATGCACTTCTAGGTCAGCTTACAAAAAAAGCAGATGTGTACAGTTTCGGCGTTCTCTTGCTCGAAGTAATCAGTGGTAGAAGTAGCAGCAAAGCTGCGTTTGGAGATAAGCTACTGGTTCTTGTGGAATGGACATGGAAGCTGAAAGAAGAAAATAGGCTTCTGGACATTGTTGATCCAGAACTAACTTCATATGATGAGACTGAGGTCATGCGTTTCATTAAGGTTGCTCTGTTCTGTACCCAAGCAGTTGCTTATCATAGACCGACCATGAAGGAAGTTGTGGAAATGCTGTTCAAGGAAGTTCACCTCAATGACAAGGCTTTGACGGAGCCCGGAGTTCATAGGTGGCATCGTGCCTCCAGAAATGCCGTAAATTTTTCGGGTGGGACTTCAACTTCTCAGGCAAACAAGCCTAATAAAAGACCTGAAAATTCACACATAGTCTCTAACCAGTTAGGTGATCCTGATATTGTGACAGACATATATCCAAGATGA 1152 0.4219 MIGNCFGALNWCTPRWRNYSDDRSREQVISTRKFSYNSLRSATEDFHPSNRIGRGGYGVVYKGVLRDGTQVAIKCLSVESKQGAREFMTEIDMISNIRHPNLVQLVGCCIEDNHRILVYEFLENNSLASFLLGSKSKCVALNWPKRASICRGTASALAFLHDEVQPNIVHRDIKASNILLDGNFDPKIGDFGLAKLFPDNVTHLSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLLLEVISGRSSSKAAFGDKLLVLVEWTWKLKEENRLLDIVDPELTSYDETEVMRFIKVALFCTQAVAYHRPTMKEVVEMLFKEVHLNDKALTEPGVHRWHRASRNAVNFSGGTSTSQANKPNKRPENSHIVSNQLGDPDIVTDIYPR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr16g00030 383 SUPERFAMILY Protein kinase-like (PK-like) 24 317 IPR011009 -
Accr16g00030 383 SMART serkin_6 46 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr16g00030 383 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Accr16g00030 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Accr16g00030 383 Pfam Protein kinase domain 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr16g00030 383 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Accr16g00030 383 MobiDBLite consensus disorder prediction 343 371 - -
Accr16g00030 383 FunFam Putative LRR receptor-like serine/threonine-protein kinase 122 328 - -
Accr16g00030 383 CDD STKc_IRAK 52 316 - -
Accr16g00030 383 MobiDBLite consensus disorder prediction 343 374 - -
Accr16g00030 383 FunFam cold-responsive protein kinase 1 17 121 - -
Accr16g00030 383 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 349 - -
Accr16g00030 383 Gene3D Phosphorylase Kinase; domain 1 13 121 - -
Accr16g00030 383 ProSiteProfiles Protein kinase domain profile. 46 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr16g00030 15 331 Receptor kinase-like Gene Family AT1G56120 50.156 7.40e-103 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Accr16g00030 Pkinase 4.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr16g00030 - - gmx:100816683 552.747