Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr15g00424 ATGAGTCCACCTGCTGAGGAGAAGATGGAAGATGGTAAGCAATTAACTGCCTCAGCTAACAGCCCCCTGGTTCATGGTGAAAATGGTGACCCTGCTGACTGTCGATTCTCTGAATTCTGCAAGAATGGGCTATCATTGGATGATGAAAGTTGCAGACAAGCAATGAAGCTGTTCACAGAAACAAAACACCTTCTACAGACCAATGCATCATCTATCGGGAATGGAACGCATGAAGAAGCAGAACGGTATTGGTATTCCTTTGTCTTGTACTGCATCAAGAGATTGGCTGACAAGCATACAGACAGTGAGAAGAAAGTGACCGATAGCAATGGACTCACACTGTGCCAGATATTGAGAAAGGCAAAGCTAAACATTGTGGACTTTTTCAAAGAACTTCCTCAGTTTCTTGTTAAGGGTGGTCCAATTTTAAGTAATATATATGGCACAGATTGGGAAAGCAGGCTTGAGGCAAAGGAGTTGCATGCAAACTTTGTTCACTTAAGCATTCTTAGCGAGCGCTATAAACGTGCATTTGGGGAGTTCTTCTTGGCAAATGATACTATTGAAAAAAACTCAGCTGTTTCCATGTCTGGTGACTATGCATCTCGATATCATCGATTTGGATGGTTGGTTTTTCTGGCTCTTCGTGTCCATGCCTTCAGCCGTTTTAAAGACTTGGTGACTTGCATCAATGGCTTAGTTTCTATATTGGCTATCTTGATTATTCACATTCCCGCTCGCTTCAGGAATTTTAACATTCAAGACACATCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTGGACATCATTGCATCGCTTTGCAACAGATTTGAGACTTCAGAAGACGATGTAAGAAAAACTATGGAGAAAGCCAATAATTTAATTGCAGCTATATTGAAGAAGCAGCCTTGTCTGGCATCTGAATGCGAAACTGCAACACTTGAGAATATTGACAGAGATGGTTTGTTCTACTTTAATGATCTTACGGAAGAATCATCTCTACCATCCTGTTTAAATATCTTGGAAAAAGATTATGAAGATGCCTTTCGTAACCAAGGTGAGCTGGATGAGAGGCTGTTTATGAATGAGGAGGACAGCTTATTAGCTTCAGGAAGCTTGTCTGGAGGATCAATATCAGGAAGCAGTGTCAAGAGGAAATTTGATCAAATGGCATCACCTGCGAAGACGATTACAAGTTCACTCTCTCCCCAAAGCTCTCCTGCATCTCATCATGCAAATGGCATTCCAGTTGGTGCAAATTCAAAGATGGCTGCCACTCCTGTAACCACTGCCATGACTACTGCTAAGTGGCTTCGTACTGTCATATGCCCACTTCCATCAAAGCCTTCACCTGAGCTGGAGAAATTTTTGGCATCGTGTGATAGGGATGTCACAAGTGATGTAGTGCGCAGGGCACAGATTATATTGCAGGCTATATTTCCCAGTAGTCCTTTAGGAGAGCGATGTTTAACTGGAAGCCTTCAAAGCGCAAACCTCATGGACAATGTTTGGGCAGAACAACGGAGACTGGAAGCCCTGAAGTTATATTATAGGGTCTTGGAGGCAATGTGCAGAGCAGAAGCCCAAGTACGGCATGCAATCAATTTAACCTCGTTATTAACTAATGAGAGGTTCCATAGATGCATGCTGGCATGTTCTGCAGAATTAGTTTTGGCAACACATAAGACTGTAACAATGTTGTTTCCTGCTGTGCTGGAAAGGACTGGAATTACAGCTTTTGACCTTAGCAAGGTCATAGAAAGCTTCATAAGACATGAAGACTCTCTCCCGAGAGAATTGAGGCGACATCTAAATTCATTGGAAGAACGGCTTTTGGAGAGTATGGTATGGGAAAAGGGTTCCTCAATGTATAATTCTTTGACAGTTGCTAGACCTTCTCTCTCTTCAGAAATAACTCGGCTCGGATTGTTAGCTGAACCAATGCCATCGTTAGATGCAATTGCAACGCATATTAACTTCTCTTGTGGGGGCCTGCCCCCTGGGCCTTCCTTACAGAAGCCTGAGACTTTACCAAGTCAAAATGGGGATATTAGGTCACCAAAACGACTCTGCACAGAATATCGAAGTGTACTAGCAGAACGAAATTCCTTTACCTCACCAGTGAAGGATCGACTTCTTCCCTTCAGTAACCTTAAGTCAAAGCTACCCCCTCCTTTGCAGTCAGCTTTTGCAAGTCCAACAAGACCAAATCCAGGAGGTGGAGGGGAAACTTGTGCAGAAACAGGGATCAATATCTTTTTTGGAAAGATTGTTAAGTTGGCAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTCCAATTGTCTCAACAGATAAGAGAGAACGTGTACTGCCTTTTTCAGCAAATACTAAACCAAAGGACGTCACTTTTCTTTAACCGTCATATTGACCAAATCATTCTATGTTGTTTCTATGGAATTGCAAAGATTTCTCAACTGAACTTAACTTTTAGGGAGATCATTTACAACTATAGGAAGCAACCACAATGCAAACCACAAGTTTTTCGTGGTGTATTTATTGACTGGTCATCAACACGCCGCAATGGGAGAACTGGACAGGAGCATGTTGATATCATCACATTTTACAATGAAATATTCATCCCCTCTGTAAAAGCTCTGCTGGTTGAGCTTGGTCCTGGTGGAACAGCTACGAAAGCCAACCGGATACCTGAAGCCAGCAATAACAATGATGGCCATTTAGCTCAGTGTCCTGGGTCTCCTAAAATTTCTCCTTTTCCTAGCCTTCCTGATATGTCCCCTAAGAAAGTTTCTGCATCACACAATGTGTATGTGTCACCATTGCGATCAGCCAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCCTGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACCGCCATCAATGACCGTTTGAATGGCACGCGGAAGGTTCGAGGACCCCTCAACTTTGATGATGTTGATGTTGGCTTGGTCAGTGACTCCATGGTTGCAAACAGTCTGTATCTTCAGAATGGAAGTTGTGCGTCGTCGTCAGGAGCAACGGTGAAGTCTGAGCAGCCGGACAGTTGA 3099 0.4314 MSPPAEEKMEDGKQLTASANSPLVHGENGDPADCRFSEFCKNGLSLDDESCRQAMKLFTETKHLLQTNASSIGNGTHEEAERYWYSFVLYCIKRLADKHTDSEKKVTDSNGLTLCQILRKAKLNIVDFFKELPQFLVKGGPILSNIYGTDWESRLEAKELHANFVHLSILSERYKRAFGEFFLANDTIEKNSAVSMSGDYASRYHRFGWLVFLALRVHAFSRFKDLVTCINGLVSILAILIIHIPARFRNFNIQDTSRFVKKSSKGVDIIASLCNRFETSEDDVRKTMEKANNLIAAILKKQPCLASECETATLENIDRDGLFYFNDLTEESSLPSCLNILEKDYEDAFRNQGELDERLFMNEEDSLLASGSLSGGSISGSSVKRKFDQMASPAKTITSSLSPQSSPASHHANGIPVGANSKMAATPVTTAMTTAKWLRTVICPLPSKPSPELEKFLASCDRDVTSDVVRRAQIILQAIFPSSPLGERCLTGSLQSANLMDNVWAEQRRLEALKLYYRVLEAMCRAEAQVRHAINLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSSEITRLGLLAEPMPSLDAIATHINFSCGGLPPGPSLQKPETLPSQNGDIRSPKRLCTEYRSVLAERNSFTSPVKDRLLPFSNLKSKLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRISGMVERLQLSQQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGIAKISQLNLTFREIIYNYRKQPQCKPQVFRGVFIDWSSTRRNGRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTATKANRIPEASNNNDGHLAQCPGSPKISPFPSLPDMSPKKVSASHNVYVSPLRSAKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINDRLNGTRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGATVKSEQPDS 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr15g00424 1032 SMART RB_A_2 426 627 IPR002720 GO:0005634|GO:0051726
Accr15g00424 1032 SUPERFAMILY Cyclin-like 434 629 IPR036915 -
Accr15g00424 1032 SMART DUF3452_2 101 243 IPR024599 -
Accr15g00424 1032 FunFam Retinoblastoma-related protein 1 701 913 - -
Accr15g00424 1032 FunFam Retinoblastoma-related protein 1 429 617 - -
Accr15g00424 1032 Pfam Retinoblastoma-associated protein B domain 750 877 IPR002719 GO:0005634|GO:0051726
Accr15g00424 1032 Pfam Retinoblastoma-associated protein A domain 426 627 IPR002720 GO:0005634|GO:0051726
Accr15g00424 1032 SUPERFAMILY Cyclin-like 748 920 IPR036915 -
Accr15g00424 1032 CDD CYCLIN_AtRBR_like 750 881 - -
Accr15g00424 1032 MobiDBLite consensus disorder prediction 1 24 - -
Accr15g00424 1032 FunFam Retinoblastoma-related protein 1 204 362 - -
Accr15g00424 1032 MobiDBLite consensus disorder prediction 397 418 - -
Accr15g00424 1032 Gene3D - 429 617 - -
Accr15g00424 1032 MobiDBLite consensus disorder prediction 397 411 - -
Accr15g00424 1032 Gene3D - 204 362 - -
Accr15g00424 1032 Gene3D - 714 902 - -
Accr15g00424 1032 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 34 1030 IPR028309 GO:0006357|GO:0051726
Accr15g00424 1032 Pfam Domain of unknown function (DUF3452) 105 243 IPR024599 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr15g00424 28 1032 Core Cell Cycle Gene Families AT3G12280 69.852 0.0 1396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Accr15g00424 RB_A 1.8e-63 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr15g00424 K04681 - qsa:O6P43_001515 1646.71