Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr15g00423 ATGAGTCCACCTGCTGAGGAGAAGATGGAAGATGGTAAGCAATTAACTGCCTCAGCTAACAGCCCCCTGGTTCATGGTGAAAATGGTGACCCTGCTGACTGTCGATTCTCTGAATTCTGCAAGCAGAATGGGCTATCATTGGATGATGAAAGTTGCAGACAAGCAATGAAGCTGTTCACAGAAACAAAACACCTTCTACAGACCAATGCATCATCTATCGGGAATGGAACGCATGAAGAAGCAGAACGGTATTGGTATTCCTTTGTCTTGTACTGCATCAAGAGATTGGCTGACAAGCATACAGACAGTGAGAAGAAAGTGACCGATAGCAATGGACTCACACTGTGCCAGATATTGAGAAAGGCAAAGCTAAACATTGTGGACTTTTTCAAAGAACTTCCTCAGTTTCTTGTTAAGGGTGGTCCAATTTTAAGTAATATATATGGCACAGATTGGGAAAGCAGGCTTGAGGCAAAGGAGTTGCATGCAAACTTTGTTCACTTAAGCATTCTTAGCGAGCGCTATAAACGTGCATTTGGGGAGTTCTTCTTGGCAAATGATACTATTGAAAAAAACTCAGCTGTTTCCATGTCTGGTGACTATGCATCTCGATATCATCGATTTGGATGGTTGGTTTTTCTGGCTCTTCGTGTCCATGCCTTCAGCCGTTTTAAAGACTTGGTGACTTGCATCAATGGCTTAGTTTCTATATTGGCTATCTTGATTATTCACATTCCCGCTCGCTTCAGGAATTTTAACATTCAAGACACATCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTGGACATCATTGCATCGCTTTGCAACAGATTTGAGACTTCAGAAGACGATGTAAGAAAAACTATGGAGAAAGCCAATAATTTAATTGCAGCTATATTGAAGAAGCAGCCTTGTCTGGCATCTGAATGCGAAACTGCAACACTTGAGAATATTGACAGAGATGGTTTGTTCTACTTTAATGATCTTACGGAAGAATCATCTCTACCATCCTGTTTAAATATCTTGGAAAAAGATTATGAAGATGCCTTTCGTAACCAAGGTGAGCTGGATGAGAGGCTGTTTATGAATGAGGAGGACAGCTTATTAGCTTCAGGAAGCTTGTCTGGAGGATCAATATCAGGAAGCAGTGTCAAGAGGAAATTTGATCAAATGGCATCACCTGCGAAGACGATTACAAGTTCACTCTCTCCCCAAAGCTCTCCTGCATCTCATCATGCAAATGGCATTCCAGTTGGTGCAAATTCAAAGATGGCTGCCACTCCTGTAACCACTGCCATGACTACTGCTAAGTGGCTTCGTACTGTCATATGCCCACTTCCATCAAAGCCTTCACCTGAGCTGGAGAAATTTTTGGCATCGTGTGATAGGGATGTCACAAGTGATGTAGTGCGCAGGGCACAGATTATATTGCAGGCTATATTTCCCAGTAGTCCTTTAGGAGAGCGATGTTTAACTGGAAGCCTTCAAAGCGCAAACCTCATGGACAATGTTTGGGCAGAACAACGGAGACTGGAAGCCCTGAAGTTATATTATAGGGTCTTGGAGGCAATGTGCAGAGCAGAAGCCCAAGTACGGCATGCAATCAATTTAACCTCGTTATTAACTAATGAGAGGTTCCATAGATGCATGCTGGCATGTTCTGCAGAATTAGTTTTGGCAACACATAAGACTGTAACAATGTTGTTTCCTGCTGTGCTGGAAAGGACTGGAATTACAGCTTTTGACCTTAGCAAGGTCATAGAAAGCTTCATAAGACATGAAGACTCTCTCCCGAGAGAATTGAGGCGACATCTAAATTCATTGGAAGAACGGCTTTTGGAGAGTATGGTATGGGAAAAGGGTTCCTCAATGTATAATTCTTTGACAGTTGCTAGACCTTCTCTCTCTTCAGAAATAACTCGGCTCGGATTGTTAGCTGAACCAATGCCATCGTTAGATGCAATTGCAACGCATATTAACTTCTCTTGTGGGGGCCTGCCCCCTGGGCCTTCCTTACAGAAGCCTGAGACTTTACCAAGTCAAAATGGGGATATTAGGTCACCAAAACGACTCTGCACAGAATATCGAAGTGTACTAGCAGAACGAAATTCCTTTACCTCACCAGTGAAGGATCGACTTCTTCCCTTCAGTAACCTTAAGTCAAAGCTACCCCCTCCTTTGCAGTCAGCTTTTGCAAGTCCAACAAGACCAAATCCAGGAGGTGGAGGGGAAACTTGTGCAGAAACAGGGATCAATATCTTTTTTGGAAAGATTGTTAAGTTGGCAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTCCAATTGTCTCAACAGATAAGAGAGAACGTGTACTGCCTTTTTCAGCAAATACTAAACCAAAGGACGTCACTTTTCTTTAACCGTCATATTGACCAAATCATTCTATGTTGTTTCTATGGAATTGCAAAGATTTCTCAACTGAACTTAACTTTTAGGGAGATCATTTACAACTATAGGAAGCAACCACAATGCAAACCACAAGTTTTTCGTGGTGTATTTATTGACTGGTCATCAACACGCCGCAATGGGAGAACTGGACAGGAGCATGTTGATATCATCACATTTTACAATGAAATATTCATCCCCTCTGTAAAAGCTCTGCTGGTTGAGCTTGGTCCTGGTGGAACAGCTACGAAAGCCAACCGGATACCTGAAGCCAGCAATAACAATGATGGCCATTTAGCTCAGTGTCCTGGGTCTCCTAAAATTTCTCCTTTTCCTAGCCTTCCTGATATGTCCCCTAAGAAAGTTTCTGCATCACACAATGTGTATGTGTCACCATTGCGATCAGCCAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCCTGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACCGCCATCAATGACCGTTTGAATGGCACGCGGAAGGTTCGAGGACCCCTCAACTTTGATGATGTTGATGTTGGCTTGGTCAGTGACTCCATGGTTGCAAACAGTCTGTATCTTCAGAATGGAAGTTGTGCGTCGTCGTCAGGAGCAACGGTGAAGTCTGAGCAGCCGGACAGTTGA 3102 0.4317 MSPPAEEKMEDGKQLTASANSPLVHGENGDPADCRFSEFCKQNGLSLDDESCRQAMKLFTETKHLLQTNASSIGNGTHEEAERYWYSFVLYCIKRLADKHTDSEKKVTDSNGLTLCQILRKAKLNIVDFFKELPQFLVKGGPILSNIYGTDWESRLEAKELHANFVHLSILSERYKRAFGEFFLANDTIEKNSAVSMSGDYASRYHRFGWLVFLALRVHAFSRFKDLVTCINGLVSILAILIIHIPARFRNFNIQDTSRFVKKSSKGVDIIASLCNRFETSEDDVRKTMEKANNLIAAILKKQPCLASECETATLENIDRDGLFYFNDLTEESSLPSCLNILEKDYEDAFRNQGELDERLFMNEEDSLLASGSLSGGSISGSSVKRKFDQMASPAKTITSSLSPQSSPASHHANGIPVGANSKMAATPVTTAMTTAKWLRTVICPLPSKPSPELEKFLASCDRDVTSDVVRRAQIILQAIFPSSPLGERCLTGSLQSANLMDNVWAEQRRLEALKLYYRVLEAMCRAEAQVRHAINLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSSEITRLGLLAEPMPSLDAIATHINFSCGGLPPGPSLQKPETLPSQNGDIRSPKRLCTEYRSVLAERNSFTSPVKDRLLPFSNLKSKLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRISGMVERLQLSQQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGIAKISQLNLTFREIIYNYRKQPQCKPQVFRGVFIDWSSTRRNGRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTATKANRIPEASNNNDGHLAQCPGSPKISPFPSLPDMSPKKVSASHNVYVSPLRSAKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINDRLNGTRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGATVKSEQPDS 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr15g00423 1033 SMART DUF3452_2 102 244 IPR024599 -
Accr15g00423 1033 FunFam Retinoblastoma-related protein 1 205 363 - -
Accr15g00423 1033 Pfam Retinoblastoma-associated protein B domain 751 878 IPR002719 GO:0005634|GO:0051726
Accr15g00423 1033 CDD CYCLIN_AtRBR_like 751 882 - -
Accr15g00423 1033 Gene3D - 205 363 - -
Accr15g00423 1033 FunFam Retinoblastoma-related protein 1 430 618 - -
Accr15g00423 1033 SMART RB_A_2 427 628 IPR002720 GO:0005634|GO:0051726
Accr15g00423 1033 SUPERFAMILY Cyclin-like 749 921 IPR036915 -
Accr15g00423 1033 MobiDBLite consensus disorder prediction 1 24 - -
Accr15g00423 1033 FunFam Retinoblastoma-related protein 1 702 914 - -
Accr15g00423 1033 Pfam Domain of unknown function (DUF3452) 106 244 IPR024599 -
Accr15g00423 1033 SUPERFAMILY Cyclin-like 435 630 IPR036915 -
Accr15g00423 1033 Gene3D - 715 903 - -
Accr15g00423 1033 Gene3D - 430 618 - -
Accr15g00423 1033 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 34 1031 IPR028309 GO:0006357|GO:0051726
Accr15g00423 1033 MobiDBLite consensus disorder prediction 398 419 - -
Accr15g00423 1033 MobiDBLite consensus disorder prediction 398 412 - -
Accr15g00423 1033 Pfam Retinoblastoma-associated protein A domain 427 628 IPR002720 GO:0005634|GO:0051726
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr15g00423 28 1033 Core Cell Cycle Gene Families AT3G12280 69.783 0.0 1392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Accr15g00423 RB_A 1.8e-63 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr15g00423 K04681 - qsa:O6P43_001515 1642.09