Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr15g00284 ATGGGGAGACGAAGAGTGGCCATGAAATTGATAGAGAAAGAGAAATTGAGAAATGCAACGTTTCAGAAGAGAAAGAATGGAATTATGAAGAAAGCTCATGAGCTTTCTACACTATGTGGAGTTGATTGTTGCTTGATCGTTTATGGTCCCAACTCTATCAACGACCTTCCTGAGGTTTGGCCTCAGGATCGCATACAGGTGCGTAGAATCCTTGAGAAGTATAAGGCAAAGATAGCTGAGAAAGGTCCCAAGAAGTACAATGTGACGGAGTTCTTAAAGGACAAGATGAATAAGGTGGAAGCCGAAGCATGCAAGCTCCGGCAAGAGAGGCTCCAGAAACTCTATCCAACGTGGGACTTCACTTTCAACAATCTCGGTGAAGAACAGCTGAGGATGTTTGTCGCCACCTTGGATTCCAAAGTTGAAGATTGCGAAGAGAGGATCAAAACGTTGAAGAAGAAACGTGACATAGAGGAAAAACAACAACAACAACAACAAACAGCTGAATTATCCTCAGACAAATCATCAGCTTCAAACAGAAGCCACCTTATCTTCAGTCACAACAACAACAACAGTAGTACTGCTATGTTGTCAGCTCATAATCATCAAACCCTAGATTTCCCTCTCGAGTTTGAGGATAATAATCTTTATCATCCTCTGATGCTTCAACCCTTTCATCCAAATCTGATGCCATTCACGATGATCACACCGAATGATTCTGCAGAGACTGCTTTTGATCATTATGATCTGATGATGAGAGAATTTTCTTGTCCATCTTCTTCATGGTGTTACAGTAGTAGTAGTAACAATAACAATAATTACTGCCCTAATTATCTGCAGAATAGTAATAATAATATTCTGCAGATTCATGATGCAGCTGATCAAATAAATTGA 894 0.4016 MGRRRVAMKLIEKEKLRNATFQKRKNGIMKKAHELSTLCGVDCCLIVYGPNSINDLPEVWPQDRIQVRRILEKYKAKIAEKGPKKYNVTEFLKDKMNKVEAEACKLRQERLQKLYPTWDFTFNNLGEEQLRMFVATLDSKVEDCEERIKTLKKKRDIEEKQQQQQQTAELSSDKSSASNRSHLIFSHNNNNSSTAMLSAHNHQTLDFPLEFEDNNLYHPLMLQPFHPNLMPFTMITPNDSAETAFDHYDLMMREFSCPSSSWCYSSSSNNNNNYCPNYLQNSNNNILQIHDAADQIN 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr15g00284 297 CDD MADS 2 61 - -
Accr15g00284 297 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr15g00284 297 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr15g00284 297 PANTHER MADS BOX PROTEIN 3 150 - -
Accr15g00284 297 Gene3D - 14 99 IPR036879 GO:0003677|GO:0046983
Accr15g00284 297 MobiDBLite consensus disorder prediction 163 185 - -
Accr15g00284 297 Coils Coil 134 161 - -
Accr15g00284 297 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Accr15g00284 297 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Accr15g00284 297 MobiDBLite consensus disorder prediction 155 185 - -
Accr15g00284 297 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Accr15g00284 297 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr15g00284 1 151 Type I MADS-box Gene Family AT5G55690 38.065 3.91e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr15g00284 SRF-TF 6.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr15g00284 - - pcin:129285084 291.967