Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr15g00268 ATGGCAGATCCTCAGTATTGGTTCAACTTCATCCCTCTTCTTCATCCTTCTGATCAATCAAATAACGCCTGTAATAATTCCTTATACCCTCAACTTGATGCTCGTCAGTACTCAAATAATCACTGCACATCATTATCATCTTCCATTATTCATCAGTACCAAAGTTCTTCTAGTTCTTCCACTGTAGATCATCCTCCAAATTCTCCTCCTCTCAAAGAAGCCCTTCCTCTCATAAACAATTTAAGCCTCACAACAAGTGAACTCTCAAAGAGAGCCCTTGAAGAGGAAGAGGAACAAAAGAATGAGAGAATGGAGAAAGAATACAAAGAAGACGATAGAGAAACCGTAGCTGTAGCCCTAGGGATAGGGCTTCCTAATAGTTTGAACACTTCATCTTCTTCTTCTTCTTTTCATATGGGGTCAAGCAGTCAGATCTCAAATTGTGTTGAAATGGCTGAAAAAGGGGAACTCGGTTTGGTTTCTGGATACCCTTTGGAGAGATTAAACAAGGGTCAGTATTGGATTCCAACCCCTTCTCAGATTCTCATTGGACCTAGTCAATTCTCTTGCCCTCTATGCTTAAAGACTTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCCCAATACAGAAGAGGAGCAGATTCCCTAAAAGGGACACAACCAACGGGAATGCTAAGGCTACCATGTTATTGTTGTGCACCAGATTGCAAGCACAACATTGAGCACCCAAGGGCAAGGCCATTGAAGGACTTCAGGACTCTTCAGACTCACTACAAGAGAAAGCATGGCATCAAACCCTACACATGTCGGAAATGTGCTAAGCCCTTTGCCGTCAAAGGCGATTGGCGGACCCACGAGAAGAACTGTGGCAAGCTCTGGTACTGTCTTTGTGGCTCTGACTTTAAACACAAGAGGTCTCTTAAAGATCACATCAAGGCCTTTGGTCATGGCCATGCTGCTTATTGCTTGCATGATCAAGATGATGAACCAGCTTCTGAGATTGAACAAGATGGTGAGGGCTAA 1038 0.4297 MADPQYWFNFIPLLHPSDQSNNACNNSLYPQLDARQYSNNHCTSLSSSIIHQYQSSSSSSTVDHPPNSPPLKEALPLINNLSLTTSELSKRALEEEEEQKNERMEKEYKEDDRETVAVALGIGLPNSLNTSSSSSSFHMGSSSQISNCVEMAEKGELGLVSGYPLERLNKGQYWIPTPSQILIGPSQFSCPLCLKTFNRYNNLQMHMWGHGSQYRRGADSLKGTQPTGMLRLPCYCCAPDCKHNIEHPRARPLKDFRTLQTHYKRKHGIKPYTCRKCAKPFAVKGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIKAFGHGHAAYCLHDQDDEPASEIEQDGEG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr15g00268 345 SMART c2h2final6 298 321 IPR013087 -
Accr15g00268 345 SMART c2h2final6 188 210 IPR013087 -
Accr15g00268 345 SMART c2h2final6 272 292 IPR013087 -
Accr15g00268 345 SUPERFAMILY beta-beta-alpha zinc fingers 256 292 IPR036236 -
Accr15g00268 345 Gene3D Classic Zinc Finger 254 323 - -
Accr15g00268 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 215 IPR013087 -
Accr15g00268 345 Gene3D Classic Zinc Finger 187 210 - -
Accr15g00268 345 PANTHER ZINC FINGER PROTEIN WIP2 37 341 IPR043584 GO:0003700|GO:0010468
Accr15g00268 345 ProSitePatterns Zinc finger C2H2 type domain signature. 190 210 IPR013087 -
Accr15g00268 345 MobiDBLite consensus disorder prediction 92 112 - -
Accr15g00268 345 FunFam Zinc finger protein WIP2 241 323 - -
Accr15g00268 345 Coils Coil 90 114 - -
Accr15g00268 345 MobiDBLite consensus disorder prediction 54 73 - -
Accr15g00268 345 SUPERFAMILY beta-beta-alpha zinc fingers 182 210 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr15g00268 150 341 C2H2 Transcription Factor Family AT3G57670 77.835 2.73e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr15g00268 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr15g00268 - - gmx:100799060 424.861