Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr15g00222 ATGGCTCTATCCTCTTCCCTTTTCTCACCGACTCATCTTCTTTCCAATCACTCTAAAAAATCCATTTCAACCTCTTCAAGACTCTCCAATTCCCTCCTTAAATCTGTCTATTCACAACCATTTGTCAAATCGACGCCGTCTCTGGTAGTTACAACACCCAGACACTACCGGAGACCTTTTGCTGTTGCCGAAGAAACTCTGGTCACTTCACCGGACCCGAAATCCGACGCAGCGAGGAAGCTCTATATCGGGAACATTCCCCGCAATGTCGACAACAATGAGCTTACTCGGATTGTTGAAGAGCATGGTGCTGTTGAGAGAGCGGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGCTTTGCATTTGTCACAATGAAGACGGTTGAGGATGCAAATGCTGTAATTGAGAAGCTAAATGGCACTGAAATAGGAGGGCGTGAAATCAAAGTAAATATAACAGAAAAACCTTTGGCAACAGTTGATCTATCTATTCTCCAGGCAGAGGACTCCGAATTCGTTGACAGTCCCCACAAAGTATATGTAGGAAATCTTGCAAAAGAAGTAACAACAGATGTACTTAAAGACTTGTTCTCTTCAAAAGGAAATGTTCTTAGTGCCAAGGTTTCACGTGTTCCTGGGACCTCAAAATCCAGTGGCTTTGGTTTTGTCTCATTTTCTTCAGCTGAGGATGTTGAAACTGCAATCTCATCTTTCAACAATTCTTTGTTAGAAGGGCAACGAATTCGTGTGAACAAGGCATGA 768 0.431 MALSSSLFSPTHLLSNHSKKSISTSSRLSNSLLKSVYSQPFVKSTPSLVVTTPRHYRRPFAVAEETLVTSPDPKSDAARKLYIGNIPRNVDNNELTRIVEEHGAVERAEVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLATVDLSILQAEDSEFVDSPHKVYVGNLAKEVTTDVLKDLFSSKGNVLSAKVSRVPGTSKSSGFGFVSFSSAEDVETAISSFNNSLLEGQRIRVNKA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr15g00222 255 Gene3D - 54 160 IPR012677 -
Accr15g00222 255 FunFam 30S ribosomal protein 2, chloroplastic 166 255 - -
Accr15g00222 255 PANTHER OS02G0815200 PROTEIN 27 254 - -
Accr15g00222 255 SMART rrm1_1 180 253 IPR000504 GO:0003723
Accr15g00222 255 SMART rrm1_1 80 153 IPR000504 GO:0003723
Accr15g00222 255 Gene3D - 167 255 IPR012677 -
Accr15g00222 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 255 IPR000504 GO:0003723
Accr15g00222 255 SUPERFAMILY RNA-binding domain, RBD 71 156 IPR035979 GO:0003676
Accr15g00222 255 CDD RRM1_PSRP2_like 80 159 - -
Accr15g00222 255 SUPERFAMILY RNA-binding domain, RBD 173 255 IPR035979 GO:0003676
Accr15g00222 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 251 IPR000504 GO:0003723
Accr15g00222 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 151 IPR000504 GO:0003723
Accr15g00222 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr15g00222 56 255 Eukaryotic Initiation Factors Gene Family AT1G22760 27.670 1.24e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr15g00222 K13126 - qsa:O6P43_029496 343.199