Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr15g00208 ATGGAGCTTGGGTTGAGCTTAGGAGCTTCTTCAAAGTCTTTCACTTTCATGGAAAAGCCACAATCTTACAATAACCAACAAGAAGGCGACTTAAGCCTCAACACTGCCTTATCGATTGGTCCGATGATCAGTAACACCAGCAAAAGCTGTGACGACGACGACGAAGATGAAGATCGAGAAGAAGCCAAGAAGGAAAATCATCACAATATTACTACTATCAAAGAAGATCATCATCATCAAGCTGCTGCTTCTCTTTCCTCTTCTTCCTCACAGCTCCATCATCTTCTTCCTCACAGTTCCAAGCCTGTACCTCTCTCTTCCTTCTCATGGCCTCCTCCTGATAACTGTGATGAAGTGGGAGCAAATAATTCGGTGAGGGGTTTGAAGGTGAAGACGAAGGCGGAGGAGGAAGAGTCGGAGGAGAGGACGGTGCTATCGTCGTCTCCGATGAGCGGAGCGTCGTCGTTTCAGGTGGATCTGTGCATATACAGTAGTAATAATAATAAATCAGGAAATTATTACAGTAACAGAAGGAGGAAGTTGATGATGAATGAATCAGAAGGTGATGAAGGTAATTATAGTTATTACGATCATCAAAGGGGTTGTTCATCAAGAGCAAGCGATGAAGACGACGTCGGAGTTCGTGGTGGTAGTGGTGGCAGCGGTACCAGGAAGAAGCTGAGGCTTTCTAAAGAACAATCAGCTTTTCTTGAAGAAAGCTTCAAGGAACACAGTACTCTCAATCCTAAACAAAAACTTGCTCTTGCCAAACAACTCAATCTTCGTCCTCGTCAAGTCGAAGTCTGGTTTCAAAACCGAAGAGCAAGGACGAAGCTGAAGCAGACGGAAGTGGACTGCGAATACTTGAAGAGATGCTGCGAGACGCTATCAGAAGAGAACAGGAGGCTGCAGAAGGAGCTTCAAGAACTGAGGGCTTTGAAGGCTTCAAATTCAAACCCTTTCTTCATGCAATTACCAGCCACCACCTTGACCATGTGCCCTTCCTGTGAGCGCCTCGCGCCCAATAATCATAATAATAATAACAATTCCTCCTCCAATAATAATAATAATAATAACAACAACAATAATTCTCCTTCTTCTTCCAAACCAGTTGTTGCCTTCCCCTTTGCCAAACCCAAGTTCTATCCTTTTCCTCACTCCAAACCACACCAGTCTTGA 1179 0.4436 MELGLSLGASSKSFTFMEKPQSYNNQQEGDLSLNTALSIGPMISNTSKSCDDDDEDEDREEAKKENHHNITTIKEDHHHQAAASLSSSSSQLHHLLPHSSKPVPLSSFSWPPPDNCDEVGANNSVRGLKVKTKAEEEESEERTVLSSSPMSGASSFQVDLCIYSSNNNKSGNYYSNRRRKLMMNESEGDEGNYSYYDHQRGCSSRASDEDDVGVRGGSGGSGTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLSEENRRLQKELQELRALKASNSNPFFMQLPATTLTMCPSCERLAPNNHNNNNNSSSNNNNNNNNNNNSPSSSKPVVAFPFAKPKFYPFPHSKPHQS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr15g00208 392 MobiDBLite consensus disorder prediction 39 101 - -
Accr15g00208 392 FunFam Homeobox-leucine zipper protein 18 208 285 - -
Accr15g00208 392 Coils Coil 286 316 - -
Accr15g00208 392 SMART halz 280 325 IPR003106 GO:0006355|GO:0043565
Accr15g00208 392 MobiDBLite consensus disorder prediction 130 152 - -
Accr15g00208 392 CDD homeodomain 224 281 IPR001356 GO:0003677
Accr15g00208 392 SUPERFAMILY Homeodomain-like 209 281 IPR009057 -
Accr15g00208 392 Pfam Homeodomain 224 278 IPR001356 GO:0003677
Accr15g00208 392 SMART HOX_1 222 284 IPR001356 GO:0003677
Accr15g00208 392 MobiDBLite consensus disorder prediction 82 96 - -
Accr15g00208 392 MobiDBLite consensus disorder prediction 204 227 - -
Accr15g00208 392 MobiDBLite consensus disorder prediction 341 370 - -
Accr15g00208 392 MobiDBLite consensus disorder prediction 341 372 - -
Accr15g00208 392 ProSiteProfiles 'Homeobox' domain profile. 220 280 IPR001356 GO:0003677
Accr15g00208 392 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 66 361 - -
Accr15g00208 392 ProSitePatterns 'Homeobox' domain signature. 255 278 IPR017970 GO:0000981|GO:0006355
Accr15g00208 392 Gene3D - 228 278 - -
Accr15g00208 392 MobiDBLite consensus disorder prediction 60 81 - -
Accr15g00208 392 Pfam Homeobox associated leucine zipper 280 314 IPR003106 GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr15g00208 186 384 Homeobox Transcription Factor Family AT4G37790 55.721 1.09e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr15g00208 Homeodomain 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr15g00208 K09338 - gmx:100805312 289.656