Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr15g00155 ATGGCAAATCAACGCTATCTTTATGCATATAGCCCTACCTACGGAGGAGCTTCACCGCCTTCCGCCGCCGCCGCCGCCGCCGCCACCACTGCCAGTACCCTTTCCTCCAGCCGATATCTTTCTAGCGATATGTATTTTCCTCAACGTAAAGACTCCATTCTTCGATACTCCTCTTACGCATCTTCCGATGCCGACATTGGCCCCCCTGGTGTTTCTACCAGACTCTCCAGCGCCGCCTCCGGCCATACATCTTCCACCGCTACTCAGTTGCTATCTCAAGTTTCTTGGCCTGCTGCTATTGCTTCTGCAAATGTTGGTTCTGCTGCATTGGACTCGATTATTAACCTGAAACGCTCTTCTGATGCGCTCTACCATCCAACTTTTTTGCAAACCCATAACACAATTGGGCAAAGCGAAGCTTGGTATTCTACAAATTCGTTAACAAAGCGCCCTAGATACGAGAGTACAAGCCACTTGCCTATATACCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATGCCTGCATATTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATGTTGCTACAAGTGAGACTCTTCCTGAGAGACCAGGAGAACCAGATTGTCCATACTTTTTGAAAACTAAGAGATGCAAGTTTGGTTTGAGGTGCAAGTTTAATCATCCCATACATTTGATTGAAAATGCTGATGTTTCTACATTACCTGAGAGGCCTTTGGAGCCCCCATGCGCGTTCTACATGAAAACTGGAAAATGCAAGTTTGGTATTACCTGCAAATTTCATCACCCAAAAGACATACAGATTCAGCTATCTGAAGAACAGAATGGTGCTGTTGAGCAGACCCACTTGACCCCTCATATAAAGGGGGCTTCAGGGGACGCTCAATTATCTAATCCTTTTAGTTCGTACCCTGCTACTGTATGGCAGAATAGCAAAGGGCTTCCTATCAGACTGGGTGAAGTAGATTGTCCATTCTACATGAAAACTGGCAGCTGCAAATATGGTGCTACATGCCGCTACAATCATCCTGATAGGAATGTAATTAATCCACCTGCTACTGGGTTAGGCCATTCTGTTTTGACATCAGCAGCTGCTAATCTTAACTTTGGAATTGTAAATCCAGCTGCATCTATTTATCAAGCTATTGACCCCAGATTGTCAAGTGCAACGGTGGGAAAAGCACCAACTTTCTATCCTCAACGACCAGGACAGATTGAGTGTGATTACTATATGAAGACTGGAGAGTGTAAATTTGGAGAGTTATGCAAGTTCCATCATCCAATTGACCGCTCAGCACCATCACAATCAAATTCAGCTGCACAACAAGCTGTTAAACTCACTCCTGCAGGATTACCGAGGAGAGAGGGTTCTGTAATCTGTCCATATTATTTAAAAACTGGCACCTGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCTCCTGGAGAAGTTATGGAGATGGCAAAGTCACAAGGAGGTTATGAAGTAGGAGAGGAAGCCGAAGCTGATGAAAAACAGGCTGTTTCTGTTCAGGAAAAGAAATGA 1611 0.4538 MANQRYLYAYSPTYGGASPPSAAAAAAATTASTLSSSRYLSSDMYFPQRKDSILRYSSYASSDADIGPPGVSTRLSSAASGHTSSTATQLLSQVSWPAAIASANVGSAALDSIINLKRSSDALYHPTFLQTHNTIGQSEAWYSTNSLTKRPRYESTSHLPIYPQRPGEKDCAHYMLTRTCKFGDACIFDHPIWVPEGGIPDWKEVPNVATSETLPERPGEPDCPYFLKTKRCKFGLRCKFNHPIHLIENADVSTLPERPLEPPCAFYMKTGKCKFGITCKFHHPKDIQIQLSEEQNGAVEQTHLTPHIKGASGDAQLSNPFSSYPATVWQNSKGLPIRLGEVDCPFYMKTGSCKYGATCRYNHPDRNVINPPATGLGHSVLTSAAANLNFGIVNPAASIYQAIDPRLSSATVGKAPTFYPQRPGQIECDYYMKTGECKFGELCKFHHPIDRSAPSQSNSAAQQAVKLTPAGLPRREGSVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGGYEVGEEAEADEKQAVSVQEKK 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr15g00155 536 SUPERFAMILY CCCH zinc finger 424 450 IPR036855 GO:0046872
Accr15g00155 536 Gene3D - 250 296 - -
Accr15g00155 536 Gene3D - 327 370 - -
Accr15g00155 536 Gene3D - 421 515 - -
Accr15g00155 536 Gene3D - 163 249 - -
Accr15g00155 536 ProSiteProfiles Zinc finger C3H1-type profile. 475 503 IPR000571 GO:0046872
Accr15g00155 536 MobiDBLite consensus disorder prediction 518 536 - -
Accr15g00155 536 ProSiteProfiles Zinc finger C3H1-type profile. 217 245 IPR000571 GO:0046872
Accr15g00155 536 ProSiteProfiles Zinc finger C3H1-type profile. 165 193 IPR000571 GO:0046872
Accr15g00155 536 ProSiteProfiles Zinc finger C3H1-type profile. 338 366 IPR000571 GO:0046872
Accr15g00155 536 PANTHER PROTEIN PHOSPHATASE RELATED 328 374 - -
Accr15g00155 536 ProSiteProfiles Zinc finger C3H1-type profile. 258 286 IPR000571 GO:0046872
Accr15g00155 536 SUPERFAMILY CCCH zinc finger 222 245 IPR036855 GO:0046872
Accr15g00155 536 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 341 364 IPR000571 GO:0046872
Accr15g00155 536 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 478 502 IPR000571 GO:0046872
Accr15g00155 536 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 425 448 IPR000571 GO:0046872
Accr15g00155 536 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 219 243 IPR000571 GO:0046872
Accr15g00155 536 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 167 191 IPR000571 GO:0046872
Accr15g00155 536 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 285 IPR000571 GO:0046872
Accr15g00155 536 SMART c3hfinal6 338 365 IPR000571 GO:0046872
Accr15g00155 536 SMART c3hfinal6 217 244 IPR000571 GO:0046872
Accr15g00155 536 SMART c3hfinal6 165 192 IPR000571 GO:0046872
Accr15g00155 536 SMART c3hfinal6 422 449 IPR000571 GO:0046872
Accr15g00155 536 SMART c3hfinal6 475 502 IPR000571 GO:0046872
Accr15g00155 536 SMART c3hfinal6 258 285 IPR000571 GO:0046872
Accr15g00155 536 SUPERFAMILY CCCH zinc finger 478 502 IPR036855 GO:0046872
Accr15g00155 536 SUPERFAMILY CCCH zinc finger 263 286 IPR036855 GO:0046872
Accr15g00155 536 SUPERFAMILY CCCH zinc finger 342 366 IPR036855 GO:0046872
Accr15g00155 536 MobiDBLite consensus disorder prediction 511 536 - -
Accr15g00155 536 ProSiteProfiles Zinc finger C3H1-type profile. 422 450 IPR000571 GO:0046872
Accr15g00155 536 FunFam zinc finger CCCH domain-containing protein 37 420 516 - -
Accr15g00155 536 FunFam Zinc finger CCCH domain-containing protein 37 121 202 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr15g00155 473 516 C2H2 Transcription Factor Family AT3G02830 46.667 3.88e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr15g00155 zf-CCCH 1.3e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr15g00155 - - pcin:129313610 913.294