Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr15g00146 ATGCCAGTGTTGTTCTCTGCACGGTTGGTTCTGCTAGTTGGAGAAACGCTTCCCTTGCGAAGGTTCTTCCAGGCTTCTAGTACTTCTTATTTGCATAGCAGTGTCCATTGTTTAAGTCACGTAGAGCCTCAACATGGTCCCCTTACTCCCTTAAGCATCAGTTTGAATAATGAGAATGAAAGTAGGACGAATAACAAAGTCAATAAACTGAAGCAGTTGGGTTCCTCCTCTTTAGCCTCAAAAAGCAGAGCAAAGACCATTGGTATCAACAAAAATAAAGCAGTTGGAGTCACAAAGAAGCAGCAGATAGAATCTGCTCCGTTTGCCGCCAAGTCATTTGCTGAACTTGGCCTCCCTCATTTGTTGCTAGAGAGATTGGAAAATGAAGGTTTTACGGTTCCAACTGAAGTGCAGTCTGCAGCAATTCCGACAATTTTGAATAATCATGATGCCATAATGCAATCTTACACTGGATCAGGGAAAACATTGGCTTATCTTCTGCCCATTCTATCTAATGTCGGGCCTTTGAGGAACAAAACTTCTGAAGGTAACAGTGATGGTGAGCTTGGGAAGAAAATGGGAATAGAGGCTGTCGTTGTTGCTCCCTCTAGGGAGTTAGGCATGCAGATAGTGAGGGAGTTCGAGAAGATACTTGGACTTGCTAACAAAAAGGCGGTTCAACAGCTAGTGGGGGGCGCAAACAGATCCAGGCAAGAAGAAGCCCTCAGGAAAAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGAATAGCAGAGCTCAGTGCAGCTGGGAAACTTCACACCCATGGTTGTCGTTATTTGATCCTAGACGAAGTTGATGAACTCCTGTCATTTAACTTCCGGGAGGACATGCACCGGATACTTGAACACGTGGGGAGAAGATCAGGTGCTGACCCACGAGCACAAAATGGTACAGCTCCTCGACGGGTTGAGCGTCAAACAATTATGGTATCTGCAACCGTTCCGTTTTCTGTTGTCAGGGCAGCCCGGAGCTGGGCAAATGACCCTCTTCTTGTCCAAGCCAATAAAGTCGGCCTGCTTGAAACCATTTCTCCTCCGACGCCCGTCAATTTATCTGGATCTGCTCCTAGCTCAAATTCTAACTCTACCCTTACACAGGCAGCAGAGAGTCTACCTCCTGCATTAAAACATTACTATTGTGTCACAAAGTTACAGCATAAAGTTGATACCTTGAGAAGGTGTATTCACGCACTAGATGCCAAGTATGTTATAGTTTTCATGAACCATATTAAGCAACTTAAGGATGTCGTCTTCAAGCTCGAGGCCCGGGGGATGGAAGCTGCAGAGTTACATGGGGATCTCGGGAAACTTGCCAGGTCAACAACTCTGAAAAAGTTCAAGAATGGTGAGGTGAGAGTGCTTGTGACCAATGAATTATCGGCACGGGGATTGGATGTGGCGGAATGTGATCTTGTGGTTAATTTGGACCTACCCACAGACTCCATTCACTATGCGCACCGAGCCGGCAGAACCGGGCGCCTTGGGAGGTCTGGTACAGTGCTTTCAATATGTGAAGAGCCAGAAGTGTTTGTTGTGAGGAAACTGCAAAAGCAGCTTGGCATACCAATATCATGCTGTGATTTTGTGGAGGGAAAGCTACTTCTTAAAGAAGAGGAGAAAATCCTAAATGCTGTGAAATGA 1683 0.4587 MPVLFSARLVLLVGETLPLRRFFQASSTSYLHSSVHCLSHVEPQHGPLTPLSISLNNENESRTNNKVNKLKQLGSSSLASKSRAKTIGINKNKAVGVTKKQQIESAPFAAKSFAELGLPHLLLERLENEGFTVPTEVQSAAIPTILNNHDAIMQSYTGSGKTLAYLLPILSNVGPLRNKTSEGNSDGELGKKMGIEAVVVAPSRELGMQIVREFEKILGLANKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAELSAAGKLHTHGCRYLILDEVDELLSFNFREDMHRILEHVGRRSGADPRAQNGTAPRRVERQTIMVSATVPFSVVRAARSWANDPLLVQANKVGLLETISPPTPVNLSGSAPSSNSNSTLTQAAESLPPALKHYYCVTKLQHKVDTLRRCIHALDAKYVIVFMNHIKQLKDVVFKLEARGMEAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRSGTVLSICEEPEVFVVRKLQKQLGIPISCCDFVEGKLLLKEEEKILNAVK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr15g00146 560 Gene3D - 386 542 IPR027417 -
Accr15g00146 560 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 346 IPR014001 -
Accr15g00146 560 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 404 548 IPR001650 -
Accr15g00146 560 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Accr15g00146 560 SMART ultradead3 130 357 IPR014001 -
Accr15g00146 560 CDD DEADc 122 347 - -
Accr15g00146 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 529 IPR027417 -
Accr15g00146 560 Pfam DEAD/DEAH box helicase 135 332 IPR011545 GO:0003676|GO:0005524
Accr15g00146 560 CDD SF2_C_DEAD 389 518 - -
Accr15g00146 560 SMART helicmild6 428 509 IPR001650 -
Accr15g00146 560 Gene3D - 71 349 IPR027417 -
Accr15g00146 560 Pfam Helicase conserved C-terminal domain 403 509 IPR001650 -
Accr15g00146 560 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 29 547 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr15g00146 111 539 Eukaryotic Initiation Factors Gene Family AT3G13920 27.064 4.75e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr15g00146 - - gmx:100812968 810.446