Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr15g00144 ATGCATCCGCCGGAGCCGGAACCCTCCTTCCTGTTCGCCGCCGATGATAACAACTACAACTTGAAGGAGGATGACGCCGCGGCTACTTTCATCAACGACCTCAGCGTGGGTTCCTTGTTCACCAAGGCACTCATGGTCGTCATCATCGTCTTCCTCCTCTACTGGCTTTGTATCTCCATTTATCGCCACTGCCGTGGCCACCGCAGCCATCTCAGTGGTGGCGATGTCCCTAACTCAATTCCTAATAATAGTAATCCCGTCGACCACCACCATGACGACGAAGAGAACCTTGTCCAAAATAATGCCGACATCAAAACCGCCATAAACTCTTACCCTTGTTTCATGTACGGTGATAAGAAAGACGATGACTACCAAAACGGCACGACATGTCCGATTTGCTTGTGCGAGTATTCGGAGTCCGAGACGATGAGGATGATGCCACAATGCGGGCATCACTTTCACCTTAAATGTATTGATGAATGGCTGAGGATTAATTGGTCATGTCCTGTGTGTCGTGACTCGCCGTTGTTGCCACAGACCAGGCCGTCGTCGTAG 555 0.5081 MHPPEPEPSFLFAADDNNYNLKEDDAAATFINDLSVGSLFTKALMVVIIVFLLYWLCISIYRHCRGHRSHLSGGDVPNSIPNNSNPVDHHHDDEENLVQNNADIKTAINSYPCFMYGDKKDDDYQNGTTCPICLCEYSESETMRMMPQCGHHFHLKCIDEWLRINWSCPVCRDSPLLPQTRPSS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr15g00144 184 Pfam Ring finger domain 129 172 IPR001841 -
Accr15g00144 184 CDD RING-H2_EL5-like 130 172 - -
Accr15g00144 184 SUPERFAMILY RING/U-box 121 176 - -
Accr15g00144 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 176 IPR013083 -
Accr15g00144 184 PANTHER RING-H2 FINGER PROTEIN ATL67 29 179 IPR044289 GO:0016567|GO:0016740
Accr15g00144 184 SMART ring_2 130 171 IPR001841 -
Accr15g00144 184 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr15g00144 105 174 C3H Transcription Factor Family AT1G28040 51.429 8.77e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr15g00144 - - pcin:129290900 213.772