Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr15g00099 ATGAAGCCCTCTACCAGCAACGACAGAAGGTCTCTCAGACTTCTTGAGAAGGAAGAGAGAAGACCATCAAAGAAAACAAGCACGACAACTTCTCGAAGAAGCACAGCGAGAGCCGAGAAGAACAATTCTGACCGATCTGAATCTCCGGTTGCCGGAAATATACTTGGCGAATTGGAACGGAGAATCGGAAAGGATGGATATTACTACGAATGCCTCTTATGTGAAGATGGAGGCAGACTAATTTGTTGTGAGAAGTGTCCAGGAACCTATCATCGGAAGTGCTTGGGTCTTCGGACTATTCCAAAGGGCGAATGGCTGTGCCCTACTTGTAGTGATAACGCTGCGTCATCAAAGGAAAGTTTTCTGAAAGATTTGGGTGCCAAAAAACCTTTATCCTTCAAGAAAAAGAGAGCTGCTGCTTCTCCTTCTTCACCTTCTTCTTCAAAGAGCGACTAG 456 0.4539 MKPSTSNDRRSLRLLEKEERRPSKKTSTTTSRRSTARAEKNNSDRSESPVAGNILGELERRIGKDGYYYECLLCEDGGRLICCEKCPGTYHRKCLGLRTIPKGEWLCPTCSDNAASSKESFLKDLGAKKPLSFKKKRAAASPSSPSSSKSD 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr15g00099 151 MobiDBLite consensus disorder prediction 1 26 - -
Accr15g00099 151 SUPERFAMILY FYVE/PHD zinc finger 68 111 IPR011011 -
Accr15g00099 151 MobiDBLite consensus disorder prediction 1 52 - -
Accr15g00099 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 146 IPR013083 -
Accr15g00099 151 PANTHER PHD FINGER PROTEIN 21 147 - -
Accr15g00099 151 ProSiteProfiles Zinc finger PHD-type profile. 68 113 IPR019787 -
Accr15g00099 151 Pfam PHD-finger 71 111 IPR019787 -
Accr15g00099 151 ProSitePatterns Zinc finger PHD-type signature. 71 110 IPR019786 -
Accr15g00099 151 SMART PHD_3 70 111 IPR001965 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr15g00099 71 111 PHD Transcription Factor Family AT1G05380 56.098 3.29e-15 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr15g00099 PHD 5.5e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr15g00099 - - lja:Lj0g3v0315929.1 92.8189