Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr15g00078 ATGGATGAGGGAAAGCGTAAATCCTGGAAGGAAGATTATGAAGGGAAGGAAGAGGATTCCAAGAGGAATCGCCGTGAACGAGACCGTGAGAAGACTAGTGATAAAGGTAAGGATAGAAGTGAAGGGAGGCATAGGGATAGAGAGAAGAGGGATCGTGAGAGCCGACGCTATGATAGAGAGAAAAGCAGTGATTCTGATGAAAGATTAGATAGAGAAAGAGAGAAGCATAGAGATAAGGATAAGGATAGGACACGAGTTCATGATGAAGAAAGAGAAAGAGCTCGGGACAAGAAAAGGGAAAGAGACAGGGAAGATAGGGAAAGGGACAGAAGAGATAGGAGGGAGAAAGAAAGGGAGAAGGATAGAGAAAGGGAACGGGATAGGAGAGAGCGTGAAAGGGAAAGGGAAGTTGAAAAGGAAAGGGGGAGGAGAGGTAGAGAGAGGGAGAAGTGTAGGGAAGTTGATAGTGAGCATAGTGATGATGATTCCAGGGATAGAGAAAGAAAGCGGCACAGGAAAGATGATGATGATTACAAGGGTAGAGAGCAGGAGAAGAGTGTCATCAAGTCAAGTAGGCAAACTGAGAAAGAGGAGAGCCCAAGGAAAAAGAGTGGCAATGATAACTCAGATGCTAATGAAAGCAAACCAAGCCGTGAGGAGGAGTTAGAGGATGAAAATAGGAGGTTGGATGAAGAGATGGAAAAGAGGAGGAGGAGAGTTCAGGAGTGGCAAGAGCTGAGGAGGAAGAGAGAAGAAGCTGAGAGAGAAAAGCATGGTGAAGCAAGTGCTGATGTACCCAACTTTGGAAAGGCTTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGAACCACTACAGGGAAGCCAAATACAGCTATGGATGTCGATGAAGATGACAAACCCTTGGATAAAGAACCAAAGGATTCTACGGCAGTAGATGTTAGCAATGGACCTGTTACATCTAATTTACCAGATGAAGCTAATGATTGTCAGGCGGATGAGGAAATTGATCCATTGGATGCTTTCATGAATTCTATGGTTTTGCCTGTAGTTGAAAAGCTGAATAGTGCTGTGGCTCCTGAATCTTCTAATCAGATTGCTGAGTCAATGCCCAAGGGTAACAAGGATGAGCAAAGTAATGATGGGAACCCTAGGAAAGGTTCAAATAAATCAATTGGGAGAATAATTCCCGGTGAAGAGTCTGACCCAGATTATGAAGACCTTGAAACTGAGGGTGATCCATTAGAAGAAGATGATGATGAATTCATGAAAAGAGTAAAGAAAACCAAAGCTGAGAAACTCTCTATTGTTGACCACTCAAAGATTGATTATGAGCCATTTAAGAAAAATTTTTACATTGAAGTAAAGGAGATTGCCAAGATGACTTCTGAAGAAGTTGCATCATACAGGAAGGAATTGGAGTTGAAGATACATGGAAAGGATGTTCCAAAGCCTGTCAAATCATGGAATCAGATTGGACTCACTAGCAAAATCTTGGAGACAATAAAGAAGCTTAATTATGAAAAGCCAATGCCTATTCAAGCTCAGGCCCTCCCTGTGATTATGAGTGGTAGAGATTGCATAGGAATTGCTAAAACTGGGTCAGGAAAAACCCTTGCTTTCGTTCTGCCAATGTTGAGGCACATCAAGGATCAGCCACCAGTTGTTGCAGGAGATGGACCTATTGGGCTTATAATGGCTCCTACAAGGGAGCTTGTTCAACAGATTCACAGTGATATAAAGAAATTTGCTAAGGTACTTGGTCTTAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCGCAGCAAATCAGTGAATTGAAACGTGGTACTGAAATAGTGGTTTGTACTCCAGGTAGGATGATTGATATACTATGCACCAGCGGTGGAAAGATAACTAACCTGCGTAGAGTCACTTATCTGGTCATGGATGAGGCCGATCGTATGTTTGACATGGGCTTTGAACCTCAAATCACTCGAATTGTTCAGAATATTCGTCCAGATCATCAAACTGTTCTCTTTTCTGCTACCTTTCCCCGTCCGGTTGAAATTCTGGCTCGTAAGGTTTTGAACAAGCCTGTTGAAATACAAGTTGGTGGAAGGAGTGTTGTTAACAAGGACATAACACAGCTGGTAGAGGTGAGGCCAGAAAATGAGAGATTCTTCAGGCTCTTAGAATTACTTGGGGAATGGTATGAGAAGGGAAAGATTTTGATATTTGTTCACTCACAAGAGAAATGTGATGCTTTGTTCAAGGACTTGCTTAGGCATGGCTATCCATGCCTTTCTCTTCATGGGGCTAAGGATCAGACAGATCGGGAATCCACAATTTCTGACTTCAAAAGCAATGTGTGTAATTTGTTGATTGCAACTAGTATAGCTGCCAGGGGTTTAGATGTCAAGGAGCTCGAATTGGTCCTCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGACGTACAGGTCGAGCTGGTCGAAAGGGTTGTGCTATCACATTTATTTCAGAGGAAGAAGCACGATATGCACCAGATCTGGTTAAAGCTTTGGAACTATCTGAACAAATAGTTCCTGATGACCTGAAAGCTCTTGCTGATGGGTTTATGGCAAAAGTTAATCAAGGACTTGAGCAAGTCCATGGAACTGGTTATGGCGGCAGTGGCTTTAAATTTAATGAAGAAGAAGATGAGGTTAGGAGAGCAGCAAAGAAAGCACAAGCCAAAGAATATGGGTTTGAAGAAGATAAATCTGATTCTGAGGATGAAGATGAAGGTATTAGGAAGGCAGGAGGCGACATCTCCCAGCATCCTGCTTTTGCACAGATTCTAGTTGCTGCCACCAAAGCAAACACCCCCCCAATGCCCTCTACTTCCCAGGTAATTTCAAATGGTGGACTGTCTGTTTCTTTGCCTGGTGTTCTTGGTCTCCAGACCACAGGAGTCATGCCTGGGACAGGGCTGCCCATTGTTCCAAGTGATGGAGCAACTCGGGCAGCATTAGCGGCTATGAACCTGCAAAATAAATTAGCAAAGATTGCTGGTGCAATGCCTGAGCATTATGAAGCTGAGTTGGAGATAAATGATTTCCCCCAAAATGCTCGGTGGAAAGTTACACACAAGGAAACTCTAGGCCCAGTTTCGGAGTGGACTGGAGCTGCTATTACCACCAGGGGACAGTATTTCCCGCCTGGCAAGGTGCCAGGACCTGGTGAACGGAAACTCTACTTGTTCATTGAAGGCCCCAGTGAACAGTCTGTCAAGAGAGCAAAAGCAGAATTGAAGCGTGTGCTGGAAGACATAACAAATCAGGCTTTGCAGCTTCCTGGTGGTGCTCAACCTGGCAAATACTCTGTTGTATAA 3369 0.4378 MDEGKRKSWKEDYEGKEEDSKRNRRERDREKTSDKGKDRSEGRHRDREKRDRESRRYDREKSSDSDERLDREREKHRDKDKDRTRVHDEERERARDKKRERDREDRERDRRDRREKEREKDRERERDRREREREREVEKERGRRGREREKCREVDSEHSDDDSRDRERKRHRKDDDDYKGREQEKSVIKSSRQTEKEESPRKKSGNDNSDANESKPSREEELEDENRRLDEEMEKRRRRVQEWQELRRKREEAEREKHGEASADVPNFGKAWTLEGESDDEEGTTTGKPNTAMDVDEDDKPLDKEPKDSTAVDVSNGPVTSNLPDEANDCQADEEIDPLDAFMNSMVLPVVEKLNSAVAPESSNQIAESMPKGNKDEQSNDGNPRKGSNKSIGRIIPGEESDPDYEDLETEGDPLEEDDDEFMKRVKKTKAEKLSIVDHSKIDYEPFKKNFYIEVKEIAKMTSEEVASYRKELELKIHGKDVPKPVKSWNQIGLTSKILETIKKLNYEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDHQTVLFSATFPRPVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPENERFFRLLELLGEWYEKGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELELVLNFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLVKALELSEQIVPDDLKALADGFMAKVNQGLEQVHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPAFAQILVAATKANTPPMPSTSQVISNGGLSVSLPGVLGLQTTGVMPGTGLPIVPSDGATRAALAAMNLQNKLAKIAGAMPEHYEAELEINDFPQNARWKVTHKETLGPVSEWTGAAITTRGQYFPPGKVPGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGAQPGKYSVV 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr15g00078 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 698 IPR027417 -
Accr15g00078 1122 Gene3D - 698 871 IPR027417 -
Accr15g00078 1122 SMART ultradead3 506 711 IPR014001 -
Accr15g00078 1122 Pfam DEAD/DEAH box helicase 512 683 IPR011545 GO:0003676|GO:0005524
Accr15g00078 1122 Coils Coil 87 133 - -
Accr15g00078 1122 MobiDBLite consensus disorder prediction 292 310 - -
Accr15g00078 1122 MobiDBLite consensus disorder prediction 358 420 - -
Accr15g00078 1122 Gene3D - 439 697 IPR027417 -
Accr15g00078 1122 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 707 868 IPR001650 -
Accr15g00078 1122 CDD SF2_C_DEAD 708 838 - -
Accr15g00078 1122 MobiDBLite consensus disorder prediction 313 327 - -
Accr15g00078 1122 Coils Coil 215 256 - -
Accr15g00078 1122 MobiDBLite consensus disorder prediction 402 418 - -
Accr15g00078 1122 MobiDBLite consensus disorder prediction 903 917 - -
Accr15g00078 1122 CDD DEADc_DDX46 476 697 - -
Accr15g00078 1122 PANTHER RNA HELICASE 431 907 - -
Accr15g00078 1122 MobiDBLite consensus disorder prediction 1 337 - -
Accr15g00078 1122 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 518 696 IPR014001 -
Accr15g00078 1122 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 642 650 IPR000629 -
Accr15g00078 1122 MobiDBLite consensus disorder prediction 1 263 - -
Accr15g00078 1122 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 487 515 IPR014014 GO:0003724
Accr15g00078 1122 MobiDBLite consensus disorder prediction 358 373 - -
Accr15g00078 1122 Pfam Helicase conserved C-terminal domain 723 829 IPR001650 -
Accr15g00078 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 868 IPR027417 -
Accr15g00078 1122 CDD KH-I_AtRH42_like 1019 1121 - -
Accr15g00078 1122 FunFam probable ATP-dependent RNA helicase DDX17 449 699 - -
Accr15g00078 1122 Coils Coil 1086 1109 - -
Accr15g00078 1122 SMART helicmild6 748 829 IPR001650 -
Accr15g00078 1122 MobiDBLite consensus disorder prediction 903 934 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr15g00078 474 849 Eukaryotic Initiation Factors Gene Family AT3G19760 32.105 2.12e-57 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr15g00078 K12811 - gmx:100806467 1537.7