Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr15g00067 | ATGAAGCAGTATTCTGTTAGTTTTTCAGAGAAAACCCAGGAACTAAGGCCTCTTCTGCAAATTTCGGGTCGTCGTCATCATCATCAGAGAAAAAAATTTAAAATAATGGGGAAAGGAAGAGCACCTTGCTGTGATAAAACGAAAGTGAAGAGAGGACCATGGAGTCCTGAAGAAGACCTTAAGCTCATTACCTTTATCCACAAACATGGCCATGATAACTGGAGAGCTCTTCCTAAACTTGCAGGATTGGTGAGATGTGGGAAAAGCTGTCGTTTGAGATGGATCAACTACTTGAGGCCTGATGTGAAGCGTGGCAATTTCTCTAAGGAAGAAGAGGACACCATCATAAGGCTTCACCATGCCTTTGGAAATAAGTGGTCAAAGATTGCATCTCATTTGCCAGGAAGGACAGACAATGAGATCAAGAACGTTTGGAACACACATCTCAAGAAAATATTAAAGCCTAAGCCCTCATTATCCATCACAACTACTACTACTACTAATACTCAGTCCTCTGCTTCATCTTCTTCCTCTGAAAAAATGGAGCAAGACTCAGCAGAGAAACAAGTTCCCAATGAAGCTATTAACAATGGCGTCGTCACAGAGGACCTAAAAGAGTCACCAACTTCAGTATCTTCCTCTGATCATTCATCATCAAAACAAGAGGAAGAAGATGAACAGATTTTAGAGTCCTTGCTTAAAGAAGATGAAGATCCTCTGCTCCAAATTCCACTGGATCCATTGGACTATGACATTTGGAACATTCTGGAGAATCCAGAATCCTTCCAGTCAAATGATTTTAAGGTTCCAAGTGCTTCTGAAGATGATGCAGACAAGAACAAGTGGTTCAGTGAGTTAGAGAATGAACTTGGATTGGGAACTTCAGAGGGATTCAACCTAGCAAGAAATGATGATGCTGACATGGATTTTCTGGAATCATCATGGTCCTCTTGGCCTGAAATTTACAATCTTTAA | 975 | 0.4082 | MKQYSVSFSEKTQELRPLLQISGRRHHHQRKKFKIMGKGRAPCCDKTKVKRGPWSPEEDLKLITFIHKHGHDNWRALPKLAGLVRCGKSCRLRWINYLRPDVKRGNFSKEEEDTIIRLHHAFGNKWSKIASHLPGRTDNEIKNVWNTHLKKILKPKPSLSITTTTTTNTQSSASSSSSEKMEQDSAEKQVPNEAINNGVVTEDLKESPTSVSSSDHSSSKQEEEDEQILESLLKEDEDPLLQIPLDPLDYDIWNILENPESFQSNDFKVPSASEDDADKNKWFSELENELGLGTSEGFNLARNDDADMDFLESSWSSWPEIYNL | 324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr15g00067 | 324 | ProSiteProfiles | Myb-like domain profile. | 99 | 149 | IPR001005 | - | |
| Accr15g00067 | 324 | MobiDBLite | consensus disorder prediction | 160 | 180 | - | - | |
| Accr15g00067 | 324 | ProSiteProfiles | Myb-like domain profile. | 46 | 98 | IPR001005 | - | |
| Accr15g00067 | 324 | CDD | SANT | 106 | 149 | IPR001005 | - | |
| Accr15g00067 | 324 | FunFam | Transcription factor RAX3 | 44 | 104 | - | - | |
| Accr15g00067 | 324 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 99 | 153 | IPR017930 | - | |
| Accr15g00067 | 324 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 46 | 98 | IPR017930 | - | |
| Accr15g00067 | 324 | Pfam | Myb-like DNA-binding domain | 104 | 149 | IPR001005 | - | |
| Accr15g00067 | 324 | Pfam | Myb-like DNA-binding domain | 51 | 98 | IPR001005 | - | |
| Accr15g00067 | 324 | MobiDBLite | consensus disorder prediction | 160 | 228 | - | - | |
| Accr15g00067 | 324 | MobiDBLite | consensus disorder prediction | 189 | 216 | - | - | |
| Accr15g00067 | 324 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 39 | 260 | - | - | |
| Accr15g00067 | 324 | Gene3D | - | 106 | 190 | - | - | |
| Accr15g00067 | 324 | Gene3D | - | 50 | 103 | - | - | |
| Accr15g00067 | 324 | SMART | sant | 50 | 100 | IPR001005 | - | |
| Accr15g00067 | 324 | SMART | sant | 103 | 151 | IPR001005 | - | |
| Accr15g00067 | 324 | CDD | SANT | 53 | 98 | IPR001005 | - | |
| Accr15g00067 | 324 | SUPERFAMILY | Homeodomain-like | 49 | 145 | IPR009057 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr15g00067 | 36 | 216 | MYB Transcription Factor Family | AT1G56160 | 65.746 | 6.32e-75 | 231 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Accr15g00067 | Myb_DNA-binding | 5e-15 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr15g00067 | K09422 | - | gmx:100805511 | 257.299 |