Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr15g00066 ATGCAGATCTTCGTGAAGACTTTGACGGGAAAGACCATCACTCTCGAGGTTGAGAGCAGTGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACGCTTGCTGATTATAACATCCAAAAGGAATCAACGCTTCACTTGGTTCTAAGGCTTAGAGGAGGGACAATGATTAAAGTGAAGACTTTAACAGGAAAAGAGATTGAAATAGACATTGAGCCGAACGATACCATTGACCGAATCAAGGAAAGGGTTGAAGAAAAAGAGGGAATTCCTCCAATCCAGCAGAGGCTCATATATGCTGGTAAGCAGCTGGCCGACGATAAGACCGCCAAAGAATACAACATTGAGGGGGGCTCGGTGCTTCACTTAGTGCTTGCACTGCGGGGTGGTTGCTTGACTGATTGCTAA 474 0.462 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPIQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGCLTDC 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr15g00066 157 SMART ubq_7 77 148 IPR000626 GO:0005515
Accr15g00066 157 SMART ubq_7 1 72 IPR000626 GO:0005515
Accr15g00066 157 FunFam Polyubiquitin 3 1 76 - -
Accr15g00066 157 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Accr15g00066 157 PANTHER UBIQUITIN 1 78 - -
Accr15g00066 157 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Accr15g00066 157 SUPERFAMILY Ubiquitin-like 79 153 IPR029071 -
Accr15g00066 157 CDD Ubl_ubiquitin 1 76 - -
Accr15g00066 157 CDD Ubl_NEDD8 79 152 IPR038738 -
Accr15g00066 157 FunFam NEDD8 protein 77 154 - -
Accr15g00066 157 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Accr15g00066 157 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Accr15g00066 157 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Accr15g00066 157 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Accr15g00066 157 Gene3D - 78 156 - -
Accr15g00066 157 Gene3D - 1 77 - -
Accr15g00066 157 PRINTS Ubiquitin signature 11 31 IPR019956 -
Accr15g00066 157 PRINTS Ubiquitin signature 53 74 IPR019956 -
Accr15g00066 157 PRINTS Ubiquitin signature 32 52 IPR019956 -
Accr15g00066 157 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr15g00066 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 8.50e-50 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr15g00066 K12158 - egt:105975317 298.901