Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr15g00027 ATGACTTGTTTTCCTGTATTATTTGGTAGAAGGTCGCATTCTTCAGCAAGGCTAGATCCGGACATTGAAGAAGAGTTTTCTGGTCTTCCCCATGTCAGACTTTATACATACAAAGAACTACGAACTGCCACTGAAGATTTTAGTCCTGTTAATAAAATTGGAGAAGGCGGTTTTGGTTCTGTTTACAAGGGACAATTAAAAGGTGGAAAAGTTGCTGCTATTAAAGTCCTTTCAGCTGAATCAAGACAAGGGGTGAGGGAATTCTTGACAGAGATTAAGGTGATATCAGAAATAGAGCATGAAAATTTAGTTAAGCTTTATGGCTGTTGTGTGGAAGGAAATCACAGAATATTGGTCTACAATTATCTTGAGAACAACAGCCTCGCACAAAACCTTATAGGTAGACGCCATAGCAGTATCCAATTTAATTGGCGAATGAGGACTAGAATATGCATTGGGGTTGCACGTGGGATTGCCTTTCTCCATGAGGAAGTAAGACCGCATATTGTTCATAGGGACATAAAAGCAAGTAACATTCTTCTTGACAAAGACCTCACACCCAAGATTTCAGATTTTGGGCTTGCAAAACTGATTCCAGCAAACATGACCCATGTTAGCACACGCGTCGCAGGAACTATAGGTTACCTGGCACCAGAATATGCAATAGGAGGCAAGCTGACACGAAAAGCTGATATATACAGCTTTGGAGTCCTCCTTGTGGAGATTGTAAGTGGTAGATGTAACACAAATACACAATTACCGACTGAAGAACAATACATTCTAGAAAGGACATGGGATCTTTATGAGCGAAAGGAATTGGTAGAACTGGTGGATGAATCGCTGAATGGGGAGTTTGATGCTGAGGAAGCTTGCAGATTTCTCAAGATTGGCCTTCTTTGCACCCAGGATGATCCCAAGGTGCGGCCACTCATGTCCTCCGTGGTTTACATGCTCACCGGCAGAATGCGTGTGGATGAGAGGAACATAGCAAAACCAGCCTTGATCTCTGATTTTATGGACCTCAAAGTGAGGAAAAAACCAGTCAGTAGGATTGACATGCACACTCAGGCTTCTTCATCCTCCGCCTCTTACAACCAGGATACTACTTTTTCTTCAACCGTTTCAACCCCTGCAACTGCAACCTTCACTGCACGATATGATCAAAGCATGTAG 1173 0.4263 MTCFPVLFGRRSHSSARLDPDIEEEFSGLPHVRLYTYKELRTATEDFSPVNKIGEGGFGSVYKGQLKGGKVAAIKVLSAESRQGVREFLTEIKVISEIEHENLVKLYGCCVEGNHRILVYNYLENNSLAQNLIGRRHSSIQFNWRMRTRICIGVARGIAFLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADIYSFGVLLVEIVSGRCNTNTQLPTEEQYILERTWDLYERKELVELVDESLNGEFDAEEACRFLKIGLLCTQDDPKVRPLMSSVVYMLTGRMRVDERNIAKPALISDFMDLKVRKKPVSRIDMHTQASSSSASYNQDTTFSSTVSTPATATFTARYDQSM 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr15g00027 390 SMART serkin_6 47 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr15g00027 390 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Accr15g00027 390 Gene3D Phosphorylase Kinase; domain 1 14 122 - -
Accr15g00027 390 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 361 - -
Accr15g00027 390 Pfam Protein tyrosine and serine/threonine kinase 51 316 IPR001245 GO:0004672|GO:0006468
Accr15g00027 390 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr15g00027 390 MobiDBLite consensus disorder prediction 354 373 - -
Accr15g00027 390 FunFam cold-responsive protein kinase 1 123 334 - -
Accr15g00027 390 Gene3D Transferase(Phosphotransferase) domain 1 123 358 - -
Accr15g00027 390 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Accr15g00027 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Accr15g00027 390 FunFam cold-responsive protein kinase 1 19 122 - -
Accr15g00027 390 CDD STKc_IRAK 53 320 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr15g00027 21 383 Receptor kinase-like Gene Family AT1G53430 49.725 1.64e-112 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Accr15g00027 PK_Tyr_Ser-Thr 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr15g00027 - - qsa:O6P43_029311 593.193