Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr15g00006 ATGAGGGCCATGGCTTCCGATTTTGCTTCTGCAGAGGCACGGGGGGAGGTCTCGGAGCTGAGGCAGCGCATGGGACCAGGTCTCACCTTTGTAATTCAGGCTCAACCTTATCTGAATGTCGTTCCCATGCCCCTGGGCCTCGAAGTTATCTGCTTGAAAGCTTGTACCCATTATCCTACTCTGTTTGATCACTTTCAAAGGGAGCTGCGGGATGTTCTCCAAGACCTCCAGCATAAATCATTGGTCCAGAACTGGTGTGAAACTGAATCATGGAAACTACTGAAAGAGCTCGCCACCTCAGCTCAGCATAGGGCAATTGCAAGGAAGGTAGCTCAGCCAAAGTCTGTCTCTGTCCAAGGTGTTTTAGGAATGAACTTAGAGAAGGCCAAGGCAATACAGCACAGAATTGAGGGATTCACCAAGCACATGTCAGAATTACTCCGCATAGAAAGAGATGCCGAGTTGGAGTTTACACAAGAAGAGTTGGATGCCGTTCCTAGACCAGATGATACTTCTGACTCCTTGAAGCCGATTGAGTTCTTGGTTAGCCATAGTCAGGCTCAACAAGAACTCTGTGACACTATTTGTAATTTAAATGCCATCAGTACATCTACAGGATTGGGAGGAATGCATTTGGTGTTATTCAAGGTTGAAAGGAACCACCGGTTACCACCCACTACCCTTTCACCTGGAGACATGGTTTGTGTGAGAACATGTGATAACAGGGGTGCAGTCACAACCTCATGTCTGCAAGGCTTTGTTAACAGTCTTGGGGATGACGGCTGTAGTATAAGTGTTGCTTTAGAGTCACGCCATGGTGATCCTACATTCTCTAAACTCTTTGGGAAGAGTGTACGTATCGACCGAATCCAAGGACTGGCTGATACTCTTACCTATGAGCGCAACTGTGAAGCCCTAATGCTGCTTCAAAAGAATGGTTTACGAAAGAAGAATCCTTCTATTGCTGTTGTGGCGACTCTGTTTGGAGACGGGGAAGATTTTGCTTGGCTTGAGAAAAATCATATAACTGACTGGGATGAAGAAAACATAAACGGACTGTTAGGAAGTGAAAGCTTTGATAATTCCCAGCAAAAAGCTATAGCACTAGGTTTGAATAAAAAAAGGCCTGTATTGGTTATCCAAGGGCCTCCTGGTACAGGGAAGACAGGTTTGCTCAAGCAACTTATAGCATATGCTGTTCAGCGAGGTGAAAGGGTTCTTGTAACAGCACCTACTAACGCAGCTGTTGATAACATGGTGGAAAAGCTTTCAAATATTGGATTAAATATTGTGCGGGTTGGAAATCCTGCTCGCATATCAAAAACTGTGGGTTCAAAGTCTTTAGGGGAAATTGTGAATGCTAAGCTTGCAAGTTTTCGAGCTGAGTATGAAAGGAAGAAGTCAGATCTAAGGAGAGATCTTAGACATTGCTTAAAAGATGATTCATTAGGAGCTGGCATACGCCAACTTTTGAAACAGTTGGGAAGGTCGGTGAAGAGAAAGGAAAAGGAGACTATGAATGAGGTTCTATCGAGTGCTCAGGTTGTGCTTGCCACAAATACTGGAGCAGCTGATCCATTGATTCGAAGGCTAGATGCTTTTGACTTGGTTGTTATAGATGAAGCTGGACAGGCAATTGAACCTTCTTGTTGGATTCCTATATTGCAAGGAAAGCGCTGCATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATATTATCTAGAAAGGCTTTGGAAGGAGGTCTTGGAATATCATTACTAGAGAGGGCTACAACTTTGCATGAAGGAATTCTCACCATGAGGTTAACAACACAATACCGTATGAATGATGCAATTGCGAGTTGGGCATCAAAGGAGATGTATGGTGGATTATTGAAGTCCTCAGAGAATGTCTTTTCTCATCTTCTTGTAGACTCTTCTTTTGTCAAGCCTACATGGATAACACAATGTCCTCTGTTGTTGCTTGATACAAGAATGCCATATGGAAGTCTGTCAATTGGTTGTGAAGAGAATCTAGACCCAGCTGGAACAGGTTCATTTTATAATGAAGGCGAAGCTGATATTGTTGTGCAGCACATCTTTTCCTTAATTTATGCTGGTGTCAACCCAACAACTATTATGGTGCAATCTCCTTATGTTGCTCAAGTACAACTTTTGAGGGATATGCTGAATGAGCTGCCAGAGGCTGTTGGTACTGAGGTTGCAACAATTGATAGCTTTCAAGGACGGGAAGCTGATGCAGTAATTATATCCATGGTACGTTCAAACGCTTTAGGTGCTGTTGGATTCCTAGGTGATAGCAGAAGAATCAATGTTGCCATCACTAGGGCGCGCAAACATGTAGCAGTGGTATGTGACAGCTCCACAATTTGCCATAATACCTTCTTAGCAAGACTACTACGTCACATCCGGCATTTCGGTAGGGTGAAACATGCAGAACCCGGTCGTTCTGGAGGTTCTGGGCTGGGCATGAATCCAATGTTACCCTCCATTAATTAG 2502 0.4408 MRAMASDFASAEARGEVSELRQRMGPGLTFVIQAQPYLNVVPMPLGLEVICLKACTHYPTLFDHFQRELRDVLQDLQHKSLVQNWCETESWKLLKELATSAQHRAIARKVAQPKSVSVQGVLGMNLEKAKAIQHRIEGFTKHMSELLRIERDAELEFTQEELDAVPRPDDTSDSLKPIEFLVSHSQAQQELCDTICNLNAISTSTGLGGMHLVLFKVERNHRLPPTTLSPGDMVCVRTCDNRGAVTTSCLQGFVNSLGDDGCSISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSIAVVATLFGDGEDFAWLEKNHITDWDEENINGLLGSESFDNSQQKAIALGLNKKRPVLVIQGPPGTGKTGLLKQLIAYAVQRGERVLVTAPTNAAVDNMVEKLSNIGLNIVRVGNPARISKTVGSKSLGEIVNAKLASFRAEYERKKSDLRRDLRHCLKDDSLGAGIRQLLKQLGRSVKRKEKETMNEVLSSAQVVLATNTGAADPLIRRLDAFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGISLLERATTLHEGILTMRLTTQYRMNDAIASWASKEMYGGLLKSSENVFSHLLVDSSFVKPTWITQCPLLLLDTRMPYGSLSIGCEENLDPAGTGSFYNEGEADIVVQHIFSLIYAGVNPTTIMVQSPYVAQVQLLRDMLNELPEAVGTEVATIDSFQGREADAVIISMVRSNALGAVGFLGDSRRINVAITRARKHVAVVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGRSGGSGLGMNPMLPSIN 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr15g00006 833 Pfam AAA domain 585 788 IPR041679 -
Accr15g00006 833 Gene3D - 143 591 IPR027417 -
Accr15g00006 833 FunFam DNA helicase A 607 815 - -
Accr15g00006 833 SMART ultradead3 355 607 IPR014001 -
Accr15g00006 833 Pfam AAA domain 359 575 IPR041677 GO:0004386
Accr15g00006 833 SMART AAA_5 374 589 IPR003593 GO:0016887
Accr15g00006 833 Gene3D - 607 815 IPR027417 -
Accr15g00006 833 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 28 816 - -
Accr15g00006 833 CDD SF1_C_Upf1 609 805 IPR047187 -
Accr15g00006 833 Coils Coil 460 480 - -
Accr15g00006 833 CDD DEXXQc_SMUBP2 358 608 - -
Accr15g00006 833 Gene3D - 174 293 - -
Accr15g00006 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 796 IPR027417 -
Accr15g00006 833 FunFam DNA-binding protein SMUBP-2 isoform X2 162 293 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr15g00006 350 548 Core DNA Replication Machinery Family AT1G08840 27.363 8.07e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr15g00006 - - aip:107625008 1462.2