Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr15g00005 ATGGTTACGTCGACGAGCTTCTTGTGCAGTAGAATACCCGCAAAATTGGCTTCAAAACGGAGTTTGCATTTCCGTTGTAATGCCTCTAATAGGCCCTCTTCTTCTCTTCGGTCCCTCAGTCTGTTTAGTTGTAATAATGTCTACACCTTGTGCAGCTCATCACCTTCATTTGGCTTCCAACGAGTCATTCGAATCGGTCCTTACTGCAGCAACAATGAAACTAAGCTTTCGAATAGCAGCAAAAGCAAGACACGACGTCGATTTAAAGCAAGAACAAAGCTAACTAATCCTAACGAATCTAAGAAGGATGGGTCTTCCCAATATCCATCTCAGTCATCCTTGCCAGTGTTCCCGGCAGTGGACTTGAACACCCAGATAGAAGAACAGGAGGAGGTCCCAGGTACTGAGAGAAGGGGAGAAACTAGCATTGAGGCACCGCTCAAGGTGAGTGGCATCTACCAGAATGGAGACCCATTGGGGCGGAAGGATCTAGGGAAGAGCGTTGTGCGATGGATTCGTCATAGTATGAGGGCCATGGCTTCCGATTTTGCTTCTGCAGAGGCACGGGGGGAGGTCTCGGAGCTGAGGCAGCGCATGGGACCAGGTCTCACCTTTGTAATTCAGGCTCAACCTTATCTGAATGTCGTTCCCATGCCCCTGGGCCTCGAAGTTATCTGCTTGAAAGCTTGTACCCATTATCCTACTCTGTTTGATCACTTTCAAAGGGAGCTGCGGGATGTTCTCCAAGACCTCCAGCATAAATCATTGGTCCAGAACTGGTGTGAAACTGAATCATGGAAACTACTGAAAGAGCTCGCCACCTCAGCTCAGCATAGGGCAATTGCAAGGAAGGTAGCTCAGCCAAAGTCTGTCTCTGTCCAAGGTGTTTTAGGAATGAACTTAGAGAAGGCCAAGGCAATACAGCACAGAATTGAGGGATTCACCAAGCACATGTCAGAATTACTCCGCATAGAAAGAGATGCCGAGTTGGAGTTTACACAAGAAGAGTTGGATGCCGTTCCTAGACCAGATGATACTTCTGACTCCTTGAAGCCGATTGAGTTCTTGGTTAGCCATAGTCAGGCTCAACAAGAACTCTGTGACACTATTTGTAATTTAAATGCCATCAGTACATCTACAGGATTGGGAGGAATGCATTTGGTGTTATTCAAGGTTGAAAGGAACCACCGGTTACCACCCACTACCCTTTCACCTGGAGACATGGTTTGTGTGAGAACATGTGATAACAGGGGTGCAGTCACAACCTCATGTCTGCAAGGCTTTGTTAACAGTCTTGGGGATGACGGCTGTAGTATAAGTGTTGCTTTAGAGTCACGCCATGGTGATCCTACATTCTCTAAACTCTTTGGGAAGAGTGTACGTATCGACCGAATCCAAGGACTGGCTGATACTCTTACCTATGAGCGCAACTGTGAAGCCCTAATGCTGCTTCAAAAGAATGGTTTACGAAAGAAGAATCCTTCTATTGCTGTTGTGGCGACTCTGTTTGGAGACGGGGAAGATTTTGCTTGGCTTGAGAAAAATCATATAACTGACTGGGATGAAGAAAACATAAACGGACTGTTAGGAAGTGAAAGCTTTGATAATTCCCAGCAAAAAGCTATAGCACTAGGTTTGAATAAAAAAAGGCCTGTATTGGTTATCCAAGGGCCTCCTGGTACAGGGAAGACAGGTTTGCTCAAGCAACTTATAGCATATGCTGTTCAGCGAGGTGAAAGGGTTCTTGTAACAGCACCTACTAACGCAGCTGTTGATAACATGGTGGAAAAGCTTTCAAATATTGGATTAAATATTGTGCGGGTTGGAAATCCTGCTCGCATATCAAAAACTGTGGGTTCAAAGTCTTTAGGGGAAATTGTGAATGCTAAGCTTGCAAGTTTTCGAGCTGAGTATGAAAGGAAGAAGTCAGATCTAAGGAGAGATCTTAGACATTGCTTAAAAGATGATTCATTAGGAGCTGGCATACGCCAACTTTTGAAACAGTTGGGAAGGTCGGTGAAGAGAAAGGAAAAGGAGACTATGAATGAGGTTCTATCGAGTGCTCAGGTTGTGCTTGCCACAAATACTGGAGCAGCTGATCCATTGATTCGAAGGCTAGATGCTTTTGACTTGGTTGTTATAGATGAAGCTGGACAGGCAATTGAACCTTCTTGTTGGATTCCTATATTGCAAGGAAAGCGCTGCATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATATTATCTAGAAAGGCTTTGGAAGGAGGTCTTGGAATATCATTACTAGAGAGGGCTACAACTTTGCATGAAGGAATTCTCACCATGAGGTTAACAACACAATACCGTATGAATGATGCAATTGCGAGTTGGGCATCAAAGGAGATGTATGGTGGATTATTGAAGTCCTCAGAGAATGTCTTTTCTCATCTTCTTGTAGACTCTTCTTTTGTCAAGCCTACATGGATAACACAATGTCCTCTGTTGTTGCTTGATACAAGAATGCCATATGGAAGTCTGTCAATTGGTTGTGAAGAGAATCTAGACCCAGCTGGAACAGGTTCATTTTATAATGAAGGCGAAGCTGATATTGTTGTGCAGCACATCTTTTCCTTAATTTATGCTGGTGTCAACCCAACAACTATTATGGTGCAATCTCCTTATGTTGCTCAAGTACAACTTTTGAGGGATATGCTGAATGAGCTGCCAGAGGCTGTTGGTACTGAGGTTGCAACAATTGATAGCTTTCAAGGACGGGAAGCTGATGCAGTAATTATATCCATGGTACGTTCAAACGCTTTAGGTGCTGTTGGATTCCTAGGTGATAGCAGAAGAATCAATGTTGCCATCACTAGGGCGCGCAAACATGTAGCAGTGGTATGTGACAGCTCCACAATTTGCCATAATACCTTCTTAGCAAGACTACTACGTCACATCCGGCATTTCGGTAGGGTGAAACATGCAGAACCCGGTCGTTCTGGAGGTTCTGGGCTGGGCATGAATCCAATGTTACCCTCCATTAATTAG 3027 0.446 MVTSTSFLCSRIPAKLASKRSLHFRCNASNRPSSSLRSLSLFSCNNVYTLCSSSPSFGFQRVIRIGPYCSNNETKLSNSSKSKTRRRFKARTKLTNPNESKKDGSSQYPSQSSLPVFPAVDLNTQIEEQEEVPGTERRGETSIEAPLKVSGIYQNGDPLGRKDLGKSVVRWIRHSMRAMASDFASAEARGEVSELRQRMGPGLTFVIQAQPYLNVVPMPLGLEVICLKACTHYPTLFDHFQRELRDVLQDLQHKSLVQNWCETESWKLLKELATSAQHRAIARKVAQPKSVSVQGVLGMNLEKAKAIQHRIEGFTKHMSELLRIERDAELEFTQEELDAVPRPDDTSDSLKPIEFLVSHSQAQQELCDTICNLNAISTSTGLGGMHLVLFKVERNHRLPPTTLSPGDMVCVRTCDNRGAVTTSCLQGFVNSLGDDGCSISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSIAVVATLFGDGEDFAWLEKNHITDWDEENINGLLGSESFDNSQQKAIALGLNKKRPVLVIQGPPGTGKTGLLKQLIAYAVQRGERVLVTAPTNAAVDNMVEKLSNIGLNIVRVGNPARISKTVGSKSLGEIVNAKLASFRAEYERKKSDLRRDLRHCLKDDSLGAGIRQLLKQLGRSVKRKEKETMNEVLSSAQVVLATNTGAADPLIRRLDAFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGISLLERATTLHEGILTMRLTTQYRMNDAIASWASKEMYGGLLKSSENVFSHLLVDSSFVKPTWITQCPLLLLDTRMPYGSLSIGCEENLDPAGTGSFYNEGEADIVVQHIFSLIYAGVNPTTIMVQSPYVAQVQLLRDMLNELPEAVGTEVATIDSFQGREADAVIISMVRSNALGAVGFLGDSRRINVAITRARKHVAVVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGRSGGSGLGMNPMLPSIN 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr15g00005 1008 CDD SF1_C_Upf1 784 980 IPR047187 -
Accr15g00005 1008 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 184 991 - -
Accr15g00005 1008 Pfam AAA domain 534 750 IPR041677 GO:0004386
Accr15g00005 1008 Pfam AAA domain 760 963 IPR041679 -
Accr15g00005 1008 Gene3D - 782 990 IPR027417 -
Accr15g00005 1008 SMART ultradead3 530 782 IPR014001 -
Accr15g00005 1008 FunFam DNA-binding protein SMUBP-2 isoform X2 337 468 - -
Accr15g00005 1008 Gene3D - 318 766 IPR027417 -
Accr15g00005 1008 MobiDBLite consensus disorder prediction 74 112 - -
Accr15g00005 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 533 971 IPR027417 -
Accr15g00005 1008 Coils Coil 635 655 - -
Accr15g00005 1008 CDD DEXXQc_SMUBP2 533 783 - -
Accr15g00005 1008 Gene3D - 349 468 - -
Accr15g00005 1008 FunFam DNA helicase A 782 990 - -
Accr15g00005 1008 SMART AAA_5 549 764 IPR003593 GO:0016887
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr15g00005 525 723 Core DNA Replication Machinery Family AT1G08840 27.363 6.15e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr15g00005 - - aip:107625008 1500.34