LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr14g00860	ATGGATAACGAAATTCTTGAATTTGACATTGGGTTGGGTGGAGAAGGAGATGGCCTCGGCGACGATGATGGGGTAGACATGGAGCAACCCGTCGACGATGACGATTTGGCCTATAGCCCTGCTCCTAGCAGTGGTGGTGGAGGTGCTATTGGTAGTGGTGAGATATATCTTCCTGAGGGTGACCTCTCGGATCTCGAACCTTACGAGGGTATGGAATTCGAGTCTGAGGAGGCAGCGAAGGCCTTCTATAACTCCTACGCGCGTCGTGTTGGATTCAGTACCCGTGTCAGCTCATCTCGCCGTTCCAGACGTGATGGAGCTATTATTCAGAGACAATTTGTTTGCGCAAAGGAGGGTTTCCGCAATTTGAATGAGAAACGCACCAAGGATAGAGAGATTAAGCGCCCACGAACTATCACCAGAGTGGGATGCAAAGCTTCCTTGTCTGTGAAAATGCACGACTCTGGCAAGTGGATCGTTTCAGGGTTTGTCAGAGAACATAACCACGAACTCGTTCCACCCGATCAGGTGCATTGTCTTCGCTCTCACAGACAAATATCAGGAGCTGCTAAGACGCTGATTGACACTTTACAGGCTGCTGGGATGGGTCCTCGTAGAATCATGTCAGCTCTCATTAAAGAATATGGAGGGATAAGCAAAGTCGGTTTTACGGAGGTTGACTGTCGTAATTACATGAGGAATAATCGCCAGAGAAGTTTGGAAGGAGATATTCAACTTGTTCTGGATTATTTGAGGCAAATGCATTCTGAAAACCCTAATTTCTTCTACGCTGTGCAAGGTGAGGAGGATCAGTGCGTGAGCAACGTTTTCTGGGCTGATCCTAAGGCAAGGATGAACTATACATTTTTTGGTGATACCGTCACTTTTGACACTACTTACAGATCTAATAGATACCGGCTACCCTTTGCCCCCTTCACTGGTGTTAACCATCATGGACAGCCTGTTCTGTTTGGATGTGCTTTCATGATAAATGAATCTGAAGCATCATTTGTATGGCTTTTTAAGACATGGCTTATGGCAATGTCTGGACGTCCTCCAATGTCAATAACCACTGATCATGATTCTGTACTAAGGTCAGCCATAATACAAGTATTCCCTGAGACTCGTCACCGTTTCTGCAAGTGGCATATCTTTAAAAAGTGTCAGGAGAAGTTATCTCACATTTTTCTCAAACATCCTAATTTTGAAGCTGAATTTCACAAATGTGTTAACTTGACTGAGTCAATTGAGGAATTTGAGTCTTGTTGGTTGACACTTGTTGATAGATATGATCTAAGGGACCATGAATGGCTTCAGTCAATTTATTCTTCCCGCAGGCAGTGGGTACCTGTGTATTTGCGAGACACATTCTTTGCAGAAATGTCCATAACCCAGCGAAGTGATGGCATGAACTCATATTTTGATGGCTATGTCAATGCTTCCACTAATTTGAACCAATTTTTTAAGCTATATGAGAAAGCACTTGAAAGTCGCAATGAGAAAGAAGTAAGAGCTGACTATGACACAATGAATACTTTGCCCATATTGAGGACCCCATCTCCAATGGAAAAACAAGCATCTGAGCTGTACCCAAGAAAAATTTTCATGAGGTTCCAAGAAGAGTTAGTCGGGACATTGACATTCATGGCATCCAAGGCTGAGGATGACGGAGAGGTCATTACATATCATGTTGCGAAATTTGGAGAGGACCATAAAGCATACTATGTTAAATTCAATGTTTTGGAGATGAAAGCAACTTGTAGCTGCCACATGTTTGAATTCTCTGGTCTTCTATGTAGACACGTTTTGGCTGTCTTTAGAGTAACCAATGTGCTTACTCTTCCATCTCACTACATATTGAAACGTTGGACCAGAAATGCCAAGAGCAATGTAATATTAGAAGACCATTCTACTGATGTATATACGTATTATTTGGAATCTCATACTGTTAGATATAATACCCTCCGACATGAGGCCTTAAAATTTGTTGATGAAGGAGCAAAGACTCTTGAAAATTATGATATGGCCATGCTTGCATTGCAAGAAGCTTCAAATAGAGTTGCTGAAGCAATAAAAAATGATGGAAGAACTCCCATCAGCAATGGAAAAGTTCGGAGTAGTTTGCTGAATGTTGGAAATCATAGAGATTATACAAGGGGGATCCATGAAGAAAGCTTGATCCAGCATATGTCCGAGCAGGATGATATGGACAAGAATATTAGAGAACTTGCGAATGAGCTTCAATCTGCAAACCGCAAGTGTGAAATTTACCGGTCCAACTTGCTTTCGGTTTTGAAAGCTGTCGAGGATCACAAGTCGGAGTTGTCAGTTACGGTGCAAAACATTAAGATCAGCATGAAAGATGGTTTTTGA	2373	0.4248	MDNEILEFDIGLGGEGDGLGDDDGVDMEQPVDDDDLAYSPAPSSGGGGAIGSGEIYLPEGDLSDLEPYEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMHDSGKWIVSGFVREHNHELVPPDQVHCLRSHRQISGAAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLVLDYLRQMHSENPNFFYAVQGEEDQCVSNVFWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFMINESEASFVWLFKTWLMAMSGRPPMSITTDHDSVLRSAIIQVFPETRHRFCKWHIFKKCQEKLSHIFLKHPNFEAEFHKCVNLTESIEEFESCWLTLVDRYDLRDHEWLQSIYSSRRQWVPVYLRDTFFAEMSITQRSDGMNSYFDGYVNASTNLNQFFKLYEKALESRNEKEVRADYDTMNTLPILRTPSPMEKQASELYPRKIFMRFQEELVGTLTFMASKAEDDGEVITYHVAKFGEDHKAYYVKFNVLEMKATCSCHMFEFSGLLCRHVLAVFRVTNVLTLPSHYILKRWTRNAKSNVILEDHSTDVYTYYLESHTVRYNTLRHEALKFVDEGAKTLENYDMAMLALQEASNRVAEAIKNDGRTPISNGKVRSSLLNVGNHRDYTRGIHEESLIQHMSEQDDMDKNIRELANELQSANRKCEIYRSNLLSVLKAVEDHKSELSVTVQNIKISMKDGF	790

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr14g00860	790	MobiDBLite	consensus disorder prediction	1	53	-	-
	Accr14g00860	790	MobiDBLite	consensus disorder prediction	19	33	-	-
	Accr14g00860	790	Pfam	SWIM zinc finger	562	608	IPR007527	GO:0008270
	Accr14g00860	790	Pfam	FAR1 DNA-binding domain	82	173	IPR004330	-
	Accr14g00860	790	Coils	Coil	733	760	-	-
	Accr14g00860	790	Pfam	MULE transposase domain	294	387	IPR018289	-
	Accr14g00860	790	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	61	688	IPR031052	GO:0006355
	Accr14g00860	790	ProSiteProfiles	Zinc finger SWIM-type profile.	574	610	IPR007527	GO:0008270
	Accr14g00860	790	SMART	26again6	585	612	IPR006564	GO:0008270

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Accr14g00860		MULE	1.2e-28	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr14g00860	-		-	gmx:100793442	1339.71