Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr14g00855 ATGCAGAGCCAGCTTGTGTGTAGTGGATGTAGGAGCATTTTGCTTTACCCTAGAGGGGCAACCAATGTTTGTTGTGCATTATGCAACACAGTTACCTCAGTTCCTCCACCTGGAATGGAAATGTCTCAGCTTTATTGTGGAGGTTGTCGGACATTGCTAATGTACACACGTGGAGCTCCAAGTGTGAGATGTTCTTGCTGTCAAACTGTAAACCTTGCTCCAGCTTCTAATCAACTCGCTCATATACATTGTGGAAACTGCCGGACTACACTCATGTATCCATTTGGTGCTCCATCAGTCAAATGTGCAGTTTGTCACTATATTACTAACGTCAGTATGAGTAATGTAAGGATTCCAATTTCTGTCCACAGACCTAATGGAACAAATGACTCTGGAACATTGTCTTCTACTCCAACTAGCCAAACTGTCCTGGTTGAAAATCCTATGTCTGTTGATGCAAGTGGAAAACTGGTGAGCAATGTTGTTGTTGGCATTACAGCAGACAAGAAATAA 513 0.4269 MQSQLVCSGCRSILLYPRGATNVCCALCNTVTSVPPPGMEMSQLYCGGCRTLLMYTRGAPSVRCSCCQTVNLAPASNQLAHIHCGNCRTTLMYPFGAPSVKCAVCHYITNVSMSNVRIPISVHRPNGTNDSGTLSSTPTSQTVLVENPMSVDASGKLVSNVVVGITADKK 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr14g00855 170 Pfam LSD1 zinc finger 46 70 IPR005735 -
Accr14g00855 170 Pfam LSD1 zinc finger 7 31 IPR005735 -
Accr14g00855 170 Pfam LSD1 zinc finger 84 108 IPR005735 -
Accr14g00855 170 PANTHER PROTEIN LSD1 2 169 IPR040319 -
Accr14g00855 170 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Accr14g00855 170 NCBIfam zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Accr14g00855 170 NCBIfam zinc finger domain, LSD1 subclass 43 72 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Accr14g00855 zf-LSD1 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr14g00855 - K12191 jre:109004744 307.76