LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr14g00844	ATGGCTTTGCCTCTGCTTTTCATCTCTCTACTTCCACTCTCATTGGCTTCTCCTAATTGTAACTCCACTTGTGGGAAGCTCACAATCTCTCCTCCCTTCGGAATCAATGACTCCTACTGCTACCATAACAAGTGGTTTGAAATCGAATGCAAACAAGACTCCGCCGGAACTTACAGGCCATATCTCAAGCTCATACAACTGGAGGTCACAAAATTTGACCACAACTCCTGCAAGATTTGGGTCAACAACCCCATATACGCATGGAACTGCAAAAACACCACAGCAACAAGTGTTCACATAAATATGAGCGCAAGTCCTTTTGCCTACTCGCAGGAAGACAACGTGTTTCTGGGTGTGGGCTGCAACACACAAGCTCTTCTTCTCCGAGGAGACGATGTCGTCTTTGGCGGCTGCATCTCCATTTGCCACAACAATAACCATTCCGGAATAGGAGCTTGTGTGGGCCACTATTGCTGCGCCACTGCCCTACCTCGGAGTCTGTCGGAATTCAAACCCAGAATTGAACATGTAGCTGGAAACTACAGTGACAAGAGGAATCATGATGATGAAGATTGCAGCTATGCGCTTATTGCTCAAGATAACGGCCACAACGATTGGGGCACAAGGATTGTGAGTGAGTTGAAGGATTTGAATAGCGTTGCTGCAGTCCTTGAATATAAGAGCAGTTGCAGTCCTGACGAGTCTGATATGACGTCTTCCCAGGTCCTCATTAACTCGGCTCTCGGACCTGCCGTGTGTTTTTCTCCTTGTGGTTCTACAGGTGGGAGAGGGAACTCTGGATCCAAATCTCAAGGCTTGTCGGTGATAGGGGTAGTTTTCTCGAGCCTAGTATCCATTGTTTTCCTGGTTGGCTTGTGGATTCAGTACAAAATCTTCAGGAGAAGTAGAATAAACAAGCGAAAGGAGAAATACTTTAAGCAAAATGGTGGCCTGCTGTTGCAACGAAGAGATGCGAGCTTCGACAAAACCAAGCTGTTCAGCTCGAGGGACCTTGAAAAAGCCACCGACCGCTTCAACGTAAATAGAGTGCTGGGAAAGGGAGGCCAAGGCACTGTTTACAAGGGCATGCTTGCCGACGGCCAAATTGTTGCCGTCAAGAAACTCACATTACAAGGAAATGTTGAGGAATTCATCAATGAAGTGCTCATTCTCTCTCAGATCAACCACAGAAACGTGGTGAGGTTGTTAGGGTTTTGCCTGGAGACACAAGTTCCTCTGCTGATTTACGAATTCATTCCCAATGGTAACCTCTTCGAACACTTACATGAACAAAGTGAAGAGATCTCAATGACGTGGGAGACTCGTTTAAGAATTGCCGGCGAAGTTGCCGGAGCTCTATTTTACTTGCACTCGGCTGCTTCTCGGCCCATTTATCATAGAGACATCAAATCAACCAACATACTGCTGGATGACAAGTTGAGAGCAAAAGTTGCTGATTTTGGAACGTCAAGAATGGTGTCCATGGAAAAGACCCACATCACAACTCAAGTTCAGGGAACTTTTGGGTACTTGGATCCTGAGTATTTTCAGACGAGCCAGTTCACTGACAAGAGTGACGTGTACAGCTTTGGGGTTGTTCTGGTTGAGCTGCTGACAGGTGAAGTTGCAATATCATCGGGAAGGCCATTGGAAGCACAGGGTTTGGCTTCGTATTTCATAATGCGTATGGATGAAGGTCGTTTATATGATATTGTGGACCAAAGAATCATGAAGGAAGGGGCGAAAAAAGAAATGACACAAGTGGCAAACCTGGCAAGAAGATGCTTGAGCTTGAATGGGAGGAATAGGCCGAGCATGAGAGAAGTGACAGCGGAATTAGAAGGGATTCAGAGATTGAGAAGGAGGTCAACGTCGCATATAGAGCAGCAGAATTATGAGCACATAGACTTTGGGGGATCATTTGAAGGCTACCAAACTTGGACTACTGCAGATTACGCATCATCTGGATCCACTCTAAACACCATTGCTTCCTCATCGTCCCAGGGCTTGCTTTTTGACGATACCACCTAA	2031	0.4628	MALPLLFISLLPLSLASPNCNSTCGKLTISPPFGINDSYCYHNKWFEIECKQDSAGTYRPYLKLIQLEVTKFDHNSCKIWVNNPIYAWNCKNTTATSVHINMSASPFAYSQEDNVFLGVGCNTQALLLRGDDVVFGGCISICHNNNHSGIGACVGHYCCATALPRSLSEFKPRIEHVAGNYSDKRNHDDEDCSYALIAQDNGHNDWGTRIVSELKDLNSVAAVLEYKSSCSPDESDMTSSQVLINSALGPAVCFSPCGSTGGRGNSGSKSQGLSVIGVVFSSLVSIVFLVGLWIQYKIFRRSRINKRKEKYFKQNGGLLLQRRDASFDKTKLFSSRDLEKATDRFNVNRVLGKGGQGTVYKGMLADGQIVAVKKLTLQGNVEEFINEVLILSQINHRNVVRLLGFCLETQVPLLIYEFIPNGNLFEHLHEQSEEISMTWETRLRIAGEVAGALFYLHSAASRPIYHRDIKSTNILLDDKLRAKVADFGTSRMVSMEKTHITTQVQGTFGYLDPEYFQTSQFTDKSDVYSFGVVLVELLTGEVAISSGRPLEAQGLASYFIMRMDEGRLYDIVDQRIMKEGAKKEMTQVANLARRCLSLNGRNRPSMREVTAELEGIQRLRRRSTSHIEQQNYEHIDFGGSFEGYQTWTTADYASSGSTLNTIASSSSQGLLFDDTT	676

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr14g00844	676	ProSiteProfiles	Protein kinase domain profile.	345	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr14g00844	676	SUPERFAMILY	Protein kinase-like (PK-like)	328	636	IPR011009	-
	Accr14g00844	676	Pfam	Protein kinase domain	346	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr14g00844	676	SMART	serkin_6	345	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr14g00844	676	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	464	476	IPR008271	GO:0004672\|GO:0006468
	Accr14g00844	676	CDD	STKc_IRAK	351	616	-	-
	Accr14g00844	676	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	319	418	-	-
	Accr14g00844	676	Pfam	Wall-associated receptor kinase galacturonan-binding	20	82	IPR025287	GO:0030247
	Accr14g00844	676	Gene3D	Phosphorylase Kinase; domain 1	319	418	-	-
	Accr14g00844	676	Gene3D	Transferase(Phosphotransferase) domain 1	419	639	-	-
	Accr14g00844	676	FunFam	Wall-associated receptor kinase 2	419	636	-	-
	Accr14g00844	676	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	16	623	IPR045274	GO:0007166

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr14g00844	9	634	Receptor kinase-like Gene Family	AT1G16260	43.946	2.34e-163	484

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Accr14g00844		Pkinase	3.8e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr14g00844	-		-	pcin:129287161	972.615