Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr14g00806 ATGTTGGGTGGGCTATATGGAGACCTCCCTCCACCCTCATCCGCCGAAGAAGAGAAACCCAATAACTCCAATGTGTGGTCGAGCAGCACCAAGATGGCGCCGGCAACCCTTCGCAAGCCGGTTTTCGCACCTCCTCAGACGATCCTGAGAACCCAGAACAAGTCCAAAACCGTCAATTCTTCAGCACCTAAAACAGTGACGTCGACGCCGGTCACGGCACCGTCACAGGTGGTGCCCGATGATGCAGCACAACCCGCTCTTGTGGGTGTCCAATCGACGGTGATAGAGGAGTATGACCCGGCGAGGCCGAATGATTATGAGGAGTATCGGAGGGAGAAGAAGAGGAAGGCTAGGGAGGTAGAGATGATGAAAGAGCTCGAGAGGAGACGGCAGGAAGAGGAAGAGAGGGAGAGGAGGGAGAAAGAGGAGCGGGAGAAGGAGAGGGATAGAGAATATGGAGATTCGAGATTGAACATTTCCGGGGAGGAGGCATGGAGAAGGCGTGCGGCCATGAGTGGGGCAGTGCCAAGATCTCCATCGCCCCCGCCTAATGGTGACGGTTTTAGCATTGGCAAATCAGAAACAGGTGGTTTGGGTCTTGGTGCAGGTGGTCAAATGACAGCAGCTCAGAGAATGATGGCAAAGATGGGATGGAAGGAGGGGCAAGGACTTGGGAAGCAGGAGCAAGGAATTACTACTCCATTAATGGCGAGGAAAACAGATAGACGAGCTGGAGTCATTGTGAATGCTAGTGACAATAAGCCGGACAAGAAATTGAAAACTGTGAATTTCAATGGGCCACCTACGCGGGTGTTGCTGCTTAGGAACATGGTGGGTCCTGGCGAGGTAGATGATGAGCTTGAAGACGAAGTAGGGTCGGAATGTTCCAAGTATGGGACTGTTACTCGGGTCCTGATATTTGAGATAACAGAGCCAAATTTCCCCCCTGATGAAGCCGTCAGAATCTTTGTGCAGTTTGAGAGGTCTGAAGAAACAACTAAAGCCATTATTGACCTTGATGGTAGGTACTTTGGAGGTAGAGTGGTGCGAGCCTCATTTTATGACGAAGAGAGGTTTGGTAATAATGAATTGGCTCCAATGCCTGGAGAAGTACCTGGCTTTTTCTGA 1128 0.5124 MLGGLYGDLPPPSSAEEEKPNNSNVWSSSTKMAPATLRKPVFAPPQTILRTQNKSKTVNSSAPKTVTSTPVTAPSQVVPDDAAQPALVGVQSTVIEEYDPARPNDYEEYRREKKRKAREVEMMKELERRRQEEEERERREKEEREKERDREYGDSRLNISGEEAWRRRAAMSGAVPRSPSPPPNGDGFSIGKSETGGLGLGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMARKTDRRAGVIVNASDNKPDKKLKTVNFNGPPTRVLLLRNMVGPGEVDDELEDEVGSECSKYGTVTRVLIFEITEPNFPPDEAVRIFVQFERSEETTKAIIDLDGRYFGGRVVRASFYDEERFGNNELAPMPGEVPGFF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr14g00806 375 SUPERFAMILY RNA-binding domain, RBD 272 358 IPR035979 GO:0003676
Accr14g00806 375 Coils Coil 106 151 - -
Accr14g00806 375 MobiDBLite consensus disorder prediction 1 84 - -
Accr14g00806 375 MobiDBLite consensus disorder prediction 97 192 - -
Accr14g00806 375 MobiDBLite consensus disorder prediction 46 75 - -
Accr14g00806 375 PANTHER SPLICING FACTOR 45 SPF45 1 366 IPR040052 GO:0045292
Accr14g00806 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 350 IPR000504 GO:0003723
Accr14g00806 375 MobiDBLite consensus disorder prediction 16 34 - -
Accr14g00806 375 ProSiteProfiles G-patch domain profile. 205 251 IPR000467 GO:0003676
Accr14g00806 375 CDD RRM_UHM_SPF45 268 364 IPR034653 -
Accr14g00806 375 SMART rrm2_1 271 352 IPR003954 GO:0003676
Accr14g00806 375 FunFam Putative splicing factor 45 269 355 - -
Accr14g00806 375 PIRSF SPF45 3 371 IPR040052 GO:0045292
Accr14g00806 375 Pfam G-patch domain 208 247 IPR000467 GO:0003676
Accr14g00806 375 MobiDBLite consensus disorder prediction 100 163 - -
Accr14g00806 375 Gene3D - 269 355 IPR012677 -
Accr14g00806 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 356 IPR000504 GO:0003723
Accr14g00806 375 SMART G-patch_5 203 249 IPR000467 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr14g00806 211 246 C2H2 Transcription Factor Family AT5G26610 61.111 8.81e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr14g00806 K12840 - qsa:O6P43_013116 542.347