Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr14g00781 ATGGAGGATCACGTGGGTTTAGGAGGTGGAGCATCTGTTAATATCGGAAGGGAGGAAGAAGATGATGAATTTTGCAGTTGTTGTGAAGACGATGAAGAAGAACTATGGAAAGAGTCTGAGCAGCCAGTGGTGGAAAAGTTGAAGGAGGACTGTGATGAATATTCGGTAAAAATGTTCTTCAAGGGCTTGTCTATAGGTGGGGTTGAAAATTCCACTTCTGGGTATTCTGGAATTGGAGTGGTCATGGAAAGACCATCCGGTCTTCCAGCTATCCAGGTGCAGAAAAAACTCGATTTTTATGCCGAAAAGCTATTAGCTGAATACTTGGCTCTCATCGATGGCTTGCTGGAAGCTATGCAGAATAATATCCGCCGGGTTTACGCTTTTACAGATTCCGAATTATTGTACGATCAGATAACGTTTGAGAAGAATCTTGAGATGCCACTTTTGATAGCACTGAGAGAGAGGGTTCTGGAGCATGCCAATAACTTTGAATCATTTGTTCTTAATTTTGTTCCTAGCATTGATCTTGAGAAACCGCTGCAATTAGCTAAAGTAGCTATTGGCCTTGTCTCTCTTCCTATAGATGGTGGGAAAGTGGTTGAAAACTGTTCTATTTGTTGTGAAGACAAGCCATTGTATATAATGATCACCATGAAATGTTCGCACAAATTTTGTTCACATTGTTTGAGGGCTTATGTTGATGATAAAGTACAGTCTTGTCAAGTCCCTATAAGATGCCCTCAACCAAGATGCAAATATTACATCTCTACTGCAGAATGCAGGTCTTTTCTTCCATTTACCTCATTTGAATCTTTGGAGAAAGCCCTTGCAGAAGCAAATTTTTCAGATAGAATTTACTGCCCATTTCCAAATTGCTCTGTTCTCCTTGATCCTCGTGAATGTTTATCAGCTAGGGCTAGTTCATCTTCTAGCCAATCAGACAATTCTTGTGTTGAGTGTCCTGTTTGTCAGAGGTTTATCTGTGTGGACTGTGAGGTTCCTTGGCATTCTTCTATGAGCTGTGATGAGTACCAGAATTTACCAGAGGAGGAGAGAGATGCTTCTGACATTACCTTGCATCGACTAGCTCAAAATAAACGATGGAAACGTTGTCAGCAGTGTCGGCGGATGATTGAGCTTACTCATGGTTGTTATCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGAGCGGAATACAGGGATGGCCAACAGACGTGTCAGTGTGTGTTTTGGGATGAAGACAACTCCGAAGACTCAGTGACTCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACTTTCAATTCTCTCCCCATGATCATGGATGCATACTCAGACCAAGAACGTTCGCAGCTTGCACTTATTCAACGATTCCTTGCCGGGGGTTTCAGTCTGAGTGACCATCATCCTTATCAATCCCCTCCCCGCTGTACAGACTCCTATGTTGACGCCATGAAGGATCTACATCAGCTTCCGTGGCTTGAGCGATTTGTCTCTGTCATAAGTGACGTCTCCGTCATAAGTGACAACTACTATGAAGATTATATTCAGTAA 1572 0.4268 MEDHVGLGGGASVNIGREEEDDEFCSCCEDDEEELWKESEQPVVEKLKEDCDEYSVKMFFKGLSIGGVENSTSGYSGIGVVMERPSGLPAIQVQKKLDFYAEKLLAEYLALIDGLLEAMQNNIRRVYAFTDSELLYDQITFEKNLEMPLLIALRERVLEHANNFESFVLNFVPSIDLEKPLQLAKVAIGLVSLPIDGGKVVENCSICCEDKPLYIMITMKCSHKFCSHCLRAYVDDKVQSCQVPIRCPQPRCKYYISTAECRSFLPFTSFESLEKALAEANFSDRIYCPFPNCSVLLDPRECLSARASSSSSQSDNSCVECPVCQRFICVDCEVPWHSSMSCDEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCVFWDEDNSEDSVTHSLQESEQWAWETFNSLPMIMDAYSDQERSQLALIQRFLAGGFSLSDHHPYQSPPRCTDSYVDAMKDLHQLPWLERFVSVISDVSVISDNYYEDYIQ 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr14g00781 523 FunFam RBR-type E3 ubiquitin transferase 199 284 - -
Accr14g00781 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 283 IPR013083 -
Accr14g00781 523 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 75 464 IPR031127 GO:0004842|GO:0016567
Accr14g00781 523 Pfam IBR domain, a half RING-finger domain 362 411 IPR002867 GO:0008270
Accr14g00781 523 Pfam IBR domain, a half RING-finger domain 282 342 IPR002867 GO:0008270
Accr14g00781 523 Gene3D - 340 465 - -
Accr14g00781 523 Pfam Reverse transcriptase-like 70 173 IPR002156 GO:0003676|GO:0004523
Accr14g00781 523 Gene3D - 56 190 IPR036397 GO:0003676
Accr14g00781 523 ProSiteProfiles TRIAD supradomain profile. 200 417 IPR044066 -
Accr14g00781 523 CDD BRcat_RBR_unk 283 345 - -
Accr14g00781 523 FunFam RBR-type E3 ubiquitin transferase 340 465 - -
Accr14g00781 523 SUPERFAMILY RING/U-box 203 280 - -
Accr14g00781 523 ProSiteProfiles Zinc finger RING-type profile. 204 251 IPR001841 -
Accr14g00781 523 SUPERFAMILY RING/U-box 355 419 - -
Accr14g00781 523 SMART ibrneu5 271 342 IPR002867 GO:0008270
Accr14g00781 523 SMART ibrneu5 352 411 IPR002867 GO:0008270
Accr14g00781 523 ProSitePatterns Zinc finger RING-type signature. 221 230 IPR017907 -
Accr14g00781 523 FunFam RBR-type E3 ubiquitin transferase 56 191 - -
Accr14g00781 523 CDD Rcat_RBR_unk 368 404 - -
Accr14g00781 523 SUPERFAMILY Ribonuclease H-like 71 173 IPR012337 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr14g00781 30 402 C3H Transcription Factor Family AT2G19610 26.904 3.49e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr14g00781 - - gmx:100783040 840.106