Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr14g00470 ATGATGCAAGGTCAAACCAATTCAGCCAGTGATGGGCTTCCTAAAGTCAATTGGTTGGATCATGTTAGTGCACATGAGAACTTTTCACGTCAAAACAGGTTTTTGACTTCCAACTTTCTATTCTCCTTGCCGACTCAAAAACCATGCTCTGAAGAAGCCTTGTGTGGGAGATTTGTACCCTGTCAAAATCAAAATATTGAAAGTTTGCAAAGAACACAAGTTGAGAAGGCTTGGCGTGCTCTTTCAAGTCTACAGAATTCTTGCAGGAACTATGCCAAACCGGGAAAAACTGTACAAATCAGTCCTCTGGTTCTTGCAGACAAGAGAACAACTGCCTCGCAGAGAAGTTCTAAGAATGATAGATGTTTTCAGTTTAATAATTTTAATGTCTTAAGTGAAACCAATGTAAAATCTAATCAATATTTGACATCAAGTAATCCTATAGCTAAAGGAGGGGATAGTTTGAGGCGCCTTGATGAACCCACTACTCCAACAGTCAATAATAATTGTTCTCGAGTTTTGGATGGTCCAGTGAACCACTGTACAAAGTATACTGCTGAAGTTAACAGGTCAACAAATTGTATGGCTGACGACATTGATGAGGATGATGATGATGATGACATACTTGGGAATATTGATGTTGACCAAATAGTGGAAAACTACCAGTCGACTTGCACTCCTAAACCATCAATAGCCAAGTTTCCTCCTATTTCTCCTACTGTTGATGCAAATAGTGTTGCTAGACAAGAGGAACATGGTTTGCCACTGGAGTTGCGCTCAGATTGCATTCATGGTTATAAGGTAGCGCTTTGCCCTCAGGCCACAAATCATTTGCAGGAATGGAAGGACAATCTGATTGCTATCTCCAATGAACTGCTTGACAATGTTGACAGCCTCAATTCTTCACAGATAGCTAAGCTTCGTGAAGACAGGTCACAGTTAAATAAGCAAATTCAGCAGCTTGAAAGATATATCCATTCCTGTAAGCTTGTTGAGGAAAGACAAAACTCACATTTTTCAGCGTCCACAGCACCTCCAACTTCTTTTCAGTTTGAGACACTAAATCGAACTGAATTCAGGAGCGGATCAATGAGATATGATAACCAGTCTTATATGAATAATGAGCCATGTGGAGCATCAGTCCAGTCATTTTCATTCTCTTCTGTTGATAACTATGGCATGTCATCAGGCCCAATGGAGAGAGAAACATTTATTCCAAAGATTATTGATGTTAAATACATTGAAGGTTCTGGAGACAAACGCTGGAGTGACCAAAATTTTCCTTGGACCAAAGAGCTGGAGGTCAATAATAAAAAGGTTTTTGGAAATCATTCATTCCGCCCCAATCAGAGAGAGGTTATTAATGCAACAATGAGCGGATATGATGTTTTTGTCCTAATGCCTACAGGTGGAGGGAAGAGTCTGACCTACCAGCTCCCTGCTCTTATTTGTCCCGGCATAACTTTAGTAATCTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATCTATTGCAGGCAAATATCCCTGCTGCATACTTAAGTTCCAATATGGATTGGTCCAAACAGCAGGAGATCCTGAGAGAAATTAATTCTGATAATTGCAAATACCAGTTTTTATATGTAACACCTGAAAAAGTTGCCAAAAGTGATGTTCTTTTGAGGCAATTGGAAAGTTTGCATGTTCGTGGGTTGCTCTCTAGGATTGTAATTGATGAAGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGCCTTGGTATATTGAAACAAAAATTCCCAAATACTCCTGTTCTAGCTTTGACGGCAACAGCAACAGCCAGTGTAAAAGAAGATGTCGTTCAAGCTCTTGGTCTTGTCAACTGCATTGTTTTCCGGCAAAGTTTTAATCGCCCAAATTTATGGTACTCTGTTGTCCCTAAGACAAGGAAGTGTTTGGAGGACATTGATAAATTTATCAGGGAAAATCACAATGACGAATGTGGCATTATTTATTGTCTTTCACGAACTGACTGTGAAAAAGTTGCTGAAAAATTACAGGAATGTGGACATAAAACTGCATTTTATCACGGTAGCGTGGATCCTGCTCAACGAACCTTTGTTCAAAATCAATGGAGCAAAGATGAAATAAACATAATGTGTGCTACTGTGGCATTTGGAATGGGAATCAACAAACCTGATGTTCGCTTTGTAATCCATCACTCTCTCCCAAAATCTATTGAAGGCTACCACCAGGAGTGTGGTCGAGCTGGTAGAGATGGTCAACGTTCATCCTGCGTATTATATTATAGCTACAGTGACTACATACGAGTTAAGCACATGATAACTCAAGGAGCAATAGACCAAAGCCCAATGACATCTGGATACAATCGATCAAATTTGACAAATTCAGGGAGGGTGCTAGAAACTAACACTGGAAACCTTCAGCGGATGGTTAGCTATTGTGAAAATGATGCTGATTGTCGGCGACTTCTGCAGCTTGCTCATTTAGGGGAGAGGTTTGATTCTGCAAACTGTAAGAAAACATGTGATAACTGTTTGAAGGTCAAGAGTTTTATTGAGAAGGATGTCACAGAGATCGCAAAGCAATTGGTTGAGCTAGTTAAGGTAACAGGGCAGAATTTTTCATCATCTCATATCTTGGAAGTGTACCGGGGTTCCTTAAACCAGTTTGTCAAAAAACACCGGCATGAAACAGTACGTCTTCATGGTGCTGGGAAGCATCTAGCTAAGGGAGAGGCTTCCCGTGTATTGCATCATCTTGTTGTTGAAGATTTTCTTGTGGAGGATGTAAAGAAAAGTGATATTTATGGATCAGTCTCATCAATATTAAAGGTCAACGAGTCCAAGGCCCGGAACCTGTTTGGTGGCCAGAAAATTATATTAAGAGTTCCTTCCTCGGTTAAAGCTTCAAAGTTGGGAACTCCAGGCATAACACCAGCTAAAGGCTCTGTGACATCTGGAAAGGTGAATTTTCCACTAAGTGACACTCCTGGCATGCCTCAAACTGAAGTGGACTTGAATCTTTCAGCTAAGTTGTTCAGTGCTCTGCGGTTGCTGCGGACTGCTATTGTCAAAGAAGCTGGAGAGGGTGTAATGGCCTACCATATATTTGGAAATGCGACGCTGCAGCAGATAAGCAAGAGATTACCAAGAACAAAAGAAGAGCTCCTTGAGATCAATGGCATCAGCAAGGCCAAGGTGAGCAAGTATGGAGATCAATTACTTGAAACCATTGAAAAGACGATAAGGGAATATAACAAGTCGGACAAAAGCAGCAGCTGGAGCAACGAGAGTAATGACTCTGCTAAAAGGAGACGAGGCTTAAAAGGAAAAGCAGACGGCGACGGTGGTGATGGCGGTGACGACGATGAATGCACTCGAAGTAATGGTCGTTCAAAGAAAAGGACAGTAAAGAGAAACAATAGAAAAGCTGTGGTTTATGATTCTGGTGGAGAAGAAGATTATTTTAAAGATTGCCTAGATGAAGATCTTGATTTTGACAATATAGAGAATACTGCTTTGGATATAAATTGTAGGAATAGTGAAGGAAGAGTTCTTCCTGAATGGACATCGTGA 3597 0.4076 MMQGQTNSASDGLPKVNWLDHVSAHENFSRQNRFLTSNFLFSLPTQKPCSEEALCGRFVPCQNQNIESLQRTQVEKAWRALSSLQNSCRNYAKPGKTVQISPLVLADKRTTASQRSSKNDRCFQFNNFNVLSETNVKSNQYLTSSNPIAKGGDSLRRLDEPTTPTVNNNCSRVLDGPVNHCTKYTAEVNRSTNCMADDIDEDDDDDDILGNIDVDQIVENYQSTCTPKPSIAKFPPISPTVDANSVARQEEHGLPLELRSDCIHGYKVALCPQATNHLQEWKDNLIAISNELLDNVDSLNSSQIAKLREDRSQLNKQIQQLERYIHSCKLVEERQNSHFSASTAPPTSFQFETLNRTEFRSGSMRYDNQSYMNNEPCGASVQSFSFSSVDNYGMSSGPMERETFIPKIIDVKYIEGSGDKRWSDQNFPWTKELEVNNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSSNMDWSKQQEILREINSDNCKYQFLYVTPEKVAKSDVLLRQLESLHVRGLLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVVPKTRKCLEDIDKFIRENHNDECGIIYCLSRTDCEKVAEKLQECGHKTAFYHGSVDPAQRTFVQNQWSKDEINIMCATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMITQGAIDQSPMTSGYNRSNLTNSGRVLETNTGNLQRMVSYCENDADCRRLLQLAHLGERFDSANCKKTCDNCLKVKSFIEKDVTEIAKQLVELVKVTGQNFSSSHILEVYRGSLNQFVKKHRHETVRLHGAGKHLAKGEASRVLHHLVVEDFLVEDVKKSDIYGSVSSILKVNESKARNLFGGQKIILRVPSSVKASKLGTPGITPAKGSVTSGKVNFPLSDTPGMPQTEVDLNLSAKLFSALRLLRTAIVKEAGEGVMAYHIFGNATLQQISKRLPRTKEELLEINGISKAKVSKYGDQLLETIEKTIREYNKSDKSSSWSNESNDSAKRRRGLKGKADGDGGDGGDDDECTRSNGRSKKRTVKRNNRKAVVYDSGGEEDYFKDCLDEDLDFDNIENTALDINCRNSEGRVLPEWTS 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr14g00470 1198 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 654 797 IPR001650 -
Accr14g00470 1198 Pfam Helicase conserved C-terminal domain 653 759 IPR001650 -
Accr14g00470 1198 SUPERFAMILY HRDC-like 1016 1088 IPR010997 GO:0000166|GO:0044237
Accr14g00470 1198 SMART ultradead3 442 645 IPR014001 -
Accr14g00470 1198 FunFam ATP-dependent DNA helicase RecQ 419 636 - -
Accr14g00470 1198 Gene3D - 860 969 IPR036388 -
Accr14g00470 1198 MobiDBLite consensus disorder prediction 1106 1138 - -
Accr14g00470 1198 Pfam DEAD/DEAH box helicase 448 616 IPR011545 GO:0003676|GO:0005524
Accr14g00470 1198 Coils Coil 304 324 - -
Accr14g00470 1198 PANTHER DNA HELICASE RECQ FAMILY MEMBER 418 1100 - -
Accr14g00470 1198 SMART helicmild6 679 760 IPR001650 -
Accr14g00470 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 903 IPR027417 -
Accr14g00470 1198 CDD SF2_C_RecQ 637 769 - -
Accr14g00470 1198 Gene3D - 411 636 IPR027417 -
Accr14g00470 1198 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 454 629 IPR014001 -
Accr14g00470 1198 NCBIfam RecQ family ATP-dependent DNA helicase 438 913 IPR004589 GO:0004386|GO:0006310
Accr14g00470 1198 Gene3D HRDC domain 1009 1097 IPR044876 -
Accr14g00470 1198 MobiDBLite consensus disorder prediction 1093 1147 - -
Accr14g00470 1198 SMART RQC_2 862 972 IPR018982 GO:0006260|GO:0006281|GO:0043138
Accr14g00470 1198 Pfam HRDC domain 1017 1085 IPR002121 GO:0003676
Accr14g00470 1198 Pfam RQC domain 859 974 IPR018982 GO:0006260|GO:0006281|GO:0043138
Accr14g00470 1198 Gene3D - 637 856 IPR027417 -
Accr14g00470 1198 SMART hrdc7 1013 1095 IPR002121 GO:0003676
Accr14g00470 1198 FunFam Bloom syndrome, RecQ helicase 637 857 - -
Accr14g00470 1198 Pfam RecQ zinc-binding 771 853 IPR032284 -
Accr14g00470 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 778 IPR027417 -
Accr14g00470 1198 CDD DEXHc_RecQ 437 636 - -
Accr14g00470 1198 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 568 577 IPR002464 -
Accr14g00470 1198 ProSiteProfiles HRDC domain profile. 1013 1095 IPR002121 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr14g00470 668 791 Eukaryotic Initiation Factors Gene Family AT3G19760 25.984 2.99e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr14g00470 K10901 - qsa:O6P43_031507 1627.45