LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr14g00418	ATGTCATTCCGAAGCATAGTTCGTGATGTGAGGGATAGTTTCGGGAGCTTATCTAGGCGGAGTTTTGATGTCAGGCTGACTGGCCATCACAGAGGAAAGTCTCACGGATCTTTTCAAGATTTGCATGATCAGCCTCTAGTTATCCAAAGTAGCCGCTGGGCAAGCCTACCCCTGGAATTGCTGTATGATGTTATTAGAAGGCTAGAGGAGAGTGAGAGCACATGGCCTGCTCGAAGGCATGTTGTTGCGTGTGCTGCAGTTTGCCGATCTTGGAGAAATATGTGCAAGGAAATTGTGAGAAGCCCAGAATTCTGTGGAAAGCTTACTTTCCCTCTGTCCCTGAAGCAGCCTGGACCAAGAGATGGAATGATTCAGTGTTTTATCAAAAGAGATAAATCTAACTTAACGTACCACCTTTTCCTTTGTCTTAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTTCTTCTATCTGCCAAGAGAACGAGAAGAACAACTTACACAGAGTATGTTATTTCCATGGATGCTGAGAACATCTCCAGGTCAAGTAGCACTTACATTGGAAAGCTAAGATCAAATTTTCTTGGCACAAAATTCATAATATATGATACACAGCCACCATATACTTCTGCTCAAATACCACCTCCTGGGACCGGGAGGACGAGCCGAAGGTTTTATTCCAAAAAGGTCTTGCCAAAGGTGCCATCTGGTACCTTCAACATAGCTCAGGTGACATATGAATTGAATGTGCTGGGGACACGAGGCCCAAGGAGGATGCACTGTATTATGCATTCAATTCCAGTCTCTTCGCTTGATACAGATGGCACGGTTCCCGGACAACCGGAGCTGCTTCCTTGCACCCTTGAGGATTCGTTTCGCAGCATTTCCTTCTCGAAGTCTTTGGACCACTCTATCGAGTTCAGTAGTGCGCGATTTTCTGACATTGGGGCTGCATGCAGCAACGATGAGGAGGATAACAAGATGAGGCCCTTGGTTCTGAAAAACAAGCCTCCGAGATGGCATGAACAGCTTCAATGCTGGTGCCTCAACTTCCGTGGACGGGTGACAGTTGCTTCTGTCAAAAACTTCCAGTTGATTGCCGCCACCCAGCCAGCTGCCGGCGCCCCCACACCGTCTCAACCAGCTCCACCAGACCATGATAAGATAATTCTGCAATTTGGCAAAGTTGGGAAAGATATGTTCACCATGGACTACCGATACCCTCTATCCGCTTTCCAGGCTTTCGCTATATGCCTGAGCAGCTTCGACACCAAATTGGCTTGTGAATAG	1287	0.4685	MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSHGSFQDLHDQPLVIQSSRWASLPLELLYDVIRRLEESESTWPARRHVVACAAVCRSWRNMCKEIVRSPEFCGKLTFPLSLKQPGPRDGMIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDAENISRSSSTYIGKLRSNFLGTKFIIYDTQPPYTSAQIPPPGTGRTSRRFYSKKVLPKVPSGTFNIAQVTYELNVLGTRGPRRMHCIMHSIPVSSLDTDGTVPGQPELLPCTLEDSFRSISFSKSLDHSIEFSSARFSDIGAACSNDEEDNKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE	428

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr14g00418	428	Pfam	F-box domain	53	100	IPR001810	GO:0005515
	Accr14g00418	428	SUPERFAMILY	Tubby C-terminal domain-like	102	428	IPR025659	-
	Accr14g00418	428	PANTHER	TUBBY-RELATED	36	426	-	-
	Accr14g00418	428	Pfam	Tub family	114	423	IPR000007	-
	Accr14g00418	428	Gene3D	Tubby Protein; Chain A	111	428	IPR025659	-
	Accr14g00418	428	FunFam	Tubby-like F-box protein	48	101	-	-
	Accr14g00418	428	SUPERFAMILY	F-box domain	48	97	IPR036047	GO:0005515
	Accr14g00418	428	CDD	F-box_AtTLP-like	53	97	-	-
	Accr14g00418	428	PRINTS	Tubby superfamily signature	185	209	IPR000007	-
	Accr14g00418	428	PRINTS	Tubby superfamily signature	406	428	IPR000007	-
	Accr14g00418	428	PRINTS	Tubby superfamily signature	350	366	IPR000007	-
	Accr14g00418	428	PRINTS	Tubby superfamily signature	237	264	IPR000007	-
	Accr14g00418	428	PRINTS	Tubby superfamily signature	332	349	IPR000007	-
	Accr14g00418	428	PRINTS	Tubby superfamily signature	385	404	IPR000007	-
	Accr14g00418	428	PRINTS	Tubby superfamily signature	169	185	IPR000007	-
	Accr14g00418	428	ProSitePatterns	Tub family signature 2.	413	428	IPR018066	-
	Accr14g00418	428	ProSitePatterns	Tub family signature 1.	350	363	IPR018066	-
	Accr14g00418	428	FunFam	Tubby-like F-box protein	110	428	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr14g00418	1	428	TUB Transcription Factor Family	AT1G76900	69.612	0.0	606

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Accr14g00418		Tub	7.4e-116	CL0395

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr14g00418	K19600		-	gmx:100814578	781.556