Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr14g00083 ATGGCTGCTCCTACTCCTACGCACCTACCGGACCACTTCAAGTGTCCGATATCGCTTGAGATAATGTCCGACCCTGTTATCCTCTCCTCCGGTCACACCTTTGATCGGTCTTCAATCCAGCGCTGGCTTGACGCCGGCCACCGGACTTGTCCAATTACGAAATTACCCCTCCCTGATTGCCCTTCCCTCATACCCAATCACGCTCTCAGAAGCTTGATTTCAAACTATTATCATATCTCAACATTCAAGCAGCATCCTCCTCCCCAACCGGAAACCCTAATTTCCGCTATTACCTCTCGCTCGTCGTCATTGGAGAGCAAAATTGAATTGCTTGACCAACTTACGTGCCTTTCCAAGCGTGACTCTGTTTTCCGTCGGCGGCTGACTGAGTCAGGAGTCGTATCGGCGGTGCTGAACTGCGTTGACTCTGGTGAGCCTAGTCTACAGCAGAAAGCTCTGTCGTTGTTGCTCAATCTTAGTCTCGACGACGATAACAAGGTGGGTTTGGTGGCGGAGGGTGCGATAGGGAAGGTTGTTGCTGTTTTGTTAGGCGGCTCACCGGATTGCCGAGCAGTGGCGGCAACCATGTTGACGAGTTTGGCGGTTGTGGAGGTGAACAAAGCCACAGTTGGAGCATATCCATATGCTATAGGAGCTCTTGTTTCTCTTCTTCGAGATGGTGAAGGCAGGGAGAAGAAAGAAGCGGCCACAGCGCTCTATGCTATATGTTCGTTCCCGGATAATCGGAGGAGAGCCGTAGAATGTGGGGCGGTCCCCATTTTGCTAAGAAGCGTTGATTCTGGGCTTGAAAGGGCTGTTGAAGTTCTTGGTGTGTTGGCTAAGTCTAGGGAAGGTAGAGAACAAATGGAAAGGTATAATGGATTCATACAGATTTTAGTACGGGTGTTGAAGAATGGAAGCTCGAGGGGGATTCAATATGCCCTGTTAGCTCTAAATTCCGTTTGCTGTAATAGTGAAAACATGGTTCTGGAGGTGACTAAAGAAGGAGTTTTGGATATTTGTCTGGGATTGCTGGAGGATGATAATGAAAAAATAAGGAGAAATTCGTCCAGTCTGATTAAGGTTCTGCATGGTAACCATCGGGTTAGTTGA 1113 0.487 MAAPTPTHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDCPSLIPNHALRSLISNYYHISTFKQHPPPQPETLISAITSRSSSLESKIELLDQLTCLSKRDSVFRRRLTESGVVSAVLNCVDSGEPSLQQKALSLLLNLSLDDDNKVGLVAEGAIGKVVAVLLGGSPDCRAVAATMLTSLAVVEVNKATVGAYPYAIGALVSLLRDGEGREKKEAATALYAICSFPDNRRRAVECGAVPILLRSVDSGLERAVEVLGVLAKSREGREQMERYNGFIQILVRVLKNGSSRGIQYALLALNSVCCNSENMVLEVTKEGVLDICLGLLEDDNEKIRRNSSSLIKVLHGNHRVS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr14g00083 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 83 IPR013083 -
Accr14g00083 370 FunFam RING-type E3 ubiquitin transferase 8 81 - -
Accr14g00083 370 SUPERFAMILY RING/U-box 6 77 - -
Accr14g00083 370 PANTHER U BOX DOMAIN-CONTAINING 10 360 - -
Accr14g00083 370 SUPERFAMILY ARM repeat 93 363 IPR016024 -
Accr14g00083 370 SMART arm_5 121 161 IPR000225 GO:0005515
Accr14g00083 370 SMART arm_5 324 365 IPR000225 GO:0005515
Accr14g00083 370 SMART arm_5 162 202 IPR000225 GO:0005515
Accr14g00083 370 SMART arm_5 282 323 IPR000225 GO:0005515
Accr14g00083 370 SMART arm_5 245 281 IPR000225 GO:0005515
Accr14g00083 370 Gene3D - 270 364 IPR011989 -
Accr14g00083 370 CDD RING-Ubox_PUB 10 59 IPR045210 -
Accr14g00083 370 ProSiteProfiles U-box domain profile. 8 83 IPR003613 GO:0004842|GO:0016567
Accr14g00083 370 SMART Ubox_2 12 76 IPR003613 GO:0004842|GO:0016567
Accr14g00083 370 Gene3D - 90 269 IPR011989 -
Accr14g00083 370 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr14g00083 9 365 U-box Gene Family AT4G21350 62.740 4.84e-158 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr14g00083 - - pcin:129286672 651.744