Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr14g00041 | ATGCTCACTATTCTGGCTGCAACTAACAATTTCTCTAAGGAGAACCTGGTTGGAGAAGGTGGTTTTGGCCCTGTTTACAAGGGTAAGATGTCAGATGGACAAGAAATAGCTGTGAAAAGGCTATCCAGAACCTCAAAACAGGGGATCCAAGAGTTTATGAATGAAGTTGGATTGGTTGCCAAATTCCAACACCGAAATCTTGTCAGGGTTTTAGGTGGTTGTGTTCAAGGAGATGAAAGAATGTTGGTCTATGAATACATGCCTAATAGAAGTTTGGACCATTTTATTTTTGATCCTCAAGGAGGAAATCTTTTGAATTGGAGGAAGAGGTATGAAATGATTATGGGGATCGCTCGAGGATTGCTATATCTTCACCAAGATTCTAGATTAACCATCATCCATAGAGACTTGAAAACAAGTAACATTCTATTAGACGATGACTTGCTACCCAAAATTTCTGATTTTGGTTTAGCTCATATCTTTGAAGGAGATCTTTCAGCAATAAAAGCAAAAACTATTGTTGGGACATATGGTTACATGTCACCTGAATATGCAGTACATGGGCTGTTTTCTCCCAAATCTGATGTATTTAGCTTTGGGGTTATAGTGTTAGAGATACTAAGTGGCGTAAAAAATAGTCGTTACAGAAGTCCAGATCACAGCCATAATCTGTTGGGGCAGGCATGGATACTATGGAAAGAGGAACGACCCTTGGATTTTATGGATATAAATTGTGACATAAAAAATATGTCAAGTGAACTAATCAAGTGCCTACAAATTGGTCTCTTGTGTGTGCAAAAGGTCCCTGAAGATAGACCAACTATGCTGTCTGTGGTTTTCATGCTATCCAATGAATGTATGACACTTCCGGAGCCGAAGTTGCCGGGATTTTTCATGGAAGAATTTGTTGATTATAATCAGGACCATTGTAGTAACAATGCTACGACTATTACATTTTTGGAAGCCCGGGATTAG | 975 | 0.3897 | MLTILAATNNFSKENLVGEGGFGPVYKGKMSDGQEIAVKRLSRTSKQGIQEFMNEVGLVAKFQHRNLVRVLGGCVQGDERMLVYEYMPNRSLDHFIFDPQGGNLLNWRKRYEMIMGIARGLLYLHQDSRLTIIHRDLKTSNILLDDDLLPKISDFGLAHIFEGDLSAIKAKTIVGTYGYMSPEYAVHGLFSPKSDVFSFGVIVLEILSGVKNSRYRSPDHSHNLLGQAWILWKEERPLDFMDINCDIKNMSSELIKCLQIGLLCVQKVPEDRPTMLSVVFMLSNECMTLPEPKLPGFFMEEFVDYNQDHCSNNATTITFLEARD | 324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr14g00041 | 324 | Pfam | Protein tyrosine and serine/threonine kinase | 14 | 279 | IPR001245 | GO:0004672|GO:0006468 | |
| Accr14g00041 | 324 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 86 | - | - | |
| Accr14g00041 | 324 | SMART | serkin_6 | 11 | 281 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Accr14g00041 | 324 | ProSiteProfiles | Protein kinase domain profile. | 11 | 294 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Accr14g00041 | 324 | PIRSF | ILK | 3 | 291 | - | - | |
| Accr14g00041 | 324 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 87 | 290 | - | - | |
| Accr14g00041 | 324 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 1 | 86 | - | - | |
| Accr14g00041 | 324 | CDD | STKc_IRAK | 17 | 282 | - | - | |
| Accr14g00041 | 324 | Gene3D | Transferase(Phosphotransferase) domain 1 | 87 | 289 | - | - | |
| Accr14g00041 | 324 | SUPERFAMILY | Protein kinase-like (PK-like) | 4 | 282 | IPR011009 | - | |
| Accr14g00041 | 324 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 3 | 322 | - | - | |
| Accr14g00041 | 324 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 132 | 144 | IPR008271 | GO:0004672|GO:0006468 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr14g00041 | 4 | 297 | Receptor kinase-like Gene Family | AT4G23230 | 58.163 | 8.39e-121 | 359 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_DLSV | Accr14g00041 | PK_Tyr_Ser-Thr | 3.8e-46 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr14g00041 | - | - | gmx:100803488 | 471.47 |