Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01718 ATGGAAGAGGTGAATCAAATGACCAAAAGGATTGAAGATGAGGTTCTCCTCAAGGATCAGACTAGTTTACATTTAAATGATGAGAGTAACGGAAGAACTTCAGGTGGAGTTCTCTTGAAGAAAGGGCCATGGACATCTGCTGAAGATGCTATCTTAGTGGACTATGTCAGGAAGCATGGAGAGGGCAACTGGAATTCTGTTCAGAAGTATTCGGGCCTGTCTCGTTGTGGAAAAAGCTGCCGGCTGCGATGGGCGAATCACCTAAGACCAAATCTAAAGAAAGGTGCATTTACTGCAGAAGAGGAGCAGCTAATTGCTGAACTGCATGCTAAGATGGGAAACAAATGGGCACGCATGGCTGCATATTTACCTGGTCGAACAGATAATGAGATCAAGAACTATTGGAATACCTGGACCAAGAGGCATCAACGAATTGGCTTGCCGCATTATTCCCCTGATGTATGTTTGCAATCAAGGCAGCAAGCCCAACGTGGGGTTGGAATTAATGGTATTGAAAGAGGATATTTTGAATTAATGTCAAAAAACAATGATGAGATACAAAATGCTATACCCAATAGCCTGAATGCTAGTCAGGAGTTCTTATCTTATGTGCCCAAGCTTCCTGATATATCTCCTAATAGCATTCTGCTGGAAGGTTATGGCTCATCTCCAAATTGTAATATTCTGCCAACAACGTTACCTTCCCATTACCACCATGGAGGGTCTACGATGCCATTTCTTGGTTCCAACGGTATTAACAGAAACAGATCTTATCCATTTGACCATGTTTGGAATAATGCTTCAGATATGATTGCACAATCATTTGGAGTGCATTCTCCTCTTGATCATGGTCCCTCCTTTCAGAGTTCACTACCCCTACTTTCAAATGGCTATTTCTCTACTTATAAGCCAGCTTCCGAGTCTCTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGCAACTGATTTTGTAATCGAGTCTCCTACCCAAACTTGTGGACTGGAGCCAGATTGTTCTTCACCACATTATAGTGGTCTTCTGGCTGATTTAATTCACCAGGCAAAGACTATAAGCAGTTCAAAGAATCATTATTCTCACAAGAGTTCAAGTTCATTAGCTATGACTCCTAGTGAGAAAGCCGACAGTTCAACATTGAACGTGTACAGTACAGAATGGGATGACTACATTGACCCTGTTTCTCCATTTGGCGCAACATCAATCTTAAATGAATTCCCTGCTGTTTGTGCTTATAAATCCTTCTTGGATGAACTACCGCCTGCACAGGCTTCAAGTGATGACATCGTAAAGTTACAATCCGTTTACCAGGATTGGACCCCCAACATTGAAGATCAAACCCTGTCCATGTTGGATATTGCTTGGCCAGATGGCTTCCTCGCTTCATATTGGTTTGACCATGGTTCTGATGCTGTTACAACACTGAATAATGAGTTGGCAAGTAAAGTATGGTAA 1470 0.4231 MEEVNQMTKRIEDEVLLKDQTSLHLNDESNGRTSGGVLLKKGPWTSAEDAILVDYVRKHGEGNWNSVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQLIAELHAKMGNKWARMAAYLPGRTDNEIKNYWNTWTKRHQRIGLPHYSPDVCLQSRQQAQRGVGINGIERGYFELMSKNNDEIQNAIPNSLNASQEFLSYVPKLPDISPNSILLEGYGSSPNCNILPTTLPSHYHHGGSTMPFLGSNGINRNRSYPFDHVWNNASDMIAQSFGVHSPLDHGPSFQSSLPLLSNGYFSTYKPASESLKLELPSLQYPATDFVIESPTQTCGLEPDCSSPHYSGLLADLIHQAKTISSSKNHYSHKSSSSLAMTPSEKADSSTLNVYSTEWDDYIDPVSPFGATSILNEFPAVCAYKSFLDELPPAQASSDDIVKLQSVYQDWTPNIEDQTLSMLDIAWPDGFLASYWFDHGSDAVTTLNNELASKVW 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01718 489 CDD SANT 96 138 IPR001005 -
Accr13g01718 489 ProSiteProfiles Myb-like domain profile. 39 88 IPR001005 -
Accr13g01718 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 143 IPR017930 -
Accr13g01718 489 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 26 476 - -
Accr13g01718 489 Gene3D - 96 164 - -
Accr13g01718 489 CDD SANT 43 88 IPR001005 -
Accr13g01718 489 Gene3D - 40 93 - -
Accr13g01718 489 SMART sant 93 141 IPR001005 -
Accr13g01718 489 SMART sant 40 90 IPR001005 -
Accr13g01718 489 SUPERFAMILY Homeodomain-like 40 135 IPR009057 -
Accr13g01718 489 Pfam Myb-like DNA-binding domain 41 88 IPR001005 -
Accr13g01718 489 Pfam Myb-like DNA-binding domain 94 138 IPR001005 -
Accr13g01718 489 ProSiteProfiles Myb-like domain profile. 89 139 IPR001005 -
Accr13g01718 489 FunFam MYB-related transcription factor 40 93 - -
Accr13g01718 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 92 IPR017930 -
Accr13g01718 489 FunFam Transcription factor GAMYB 96 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01718 Accr-Chr13 32914830 32918373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01718 29 479 MYB Transcription Factor Family AT3G11440 38.124 2.22e-83 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr13g01718 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01718 K09422 - gmx:100805804 511.146