Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01716 ATGCAAGGAGGGTCAGGTCAAAATTCAGGATCCATAGATAAGACAAGGGTTTTAGATGTTAAACCTCTGCGTACTTTGGAACCCGTGTTTCCAAATTCAGGTCAGGCTACTTCCTTTGATGGCGCCTGTCCCACTGGGTTTTATTCCTTTTTCCCATTTGGTGCATCTCAAGGACCTCAAGCATCGCCTCCTAGGGTTCCCATGCCAACTCCTTTACGGTCTTTTAGAAGCTCTGACACTGGAGAAGCTGAGTTTCCTGGAGCTTCCAATGGAGAAAATACTGATAGCCATGCAGCACCAAACAAATCCAAATCATCCAAAAAGAAGCCTAAGATAAGTCAAGATCTGCAAGTTGATGTGAGTTCTTTATTAGGCATTGGCAAAAATGAACGTGAAGATGGTAATCGGGAATTGGTTATTCTTCTACTCATGACTTTTGATGGGCTTAGGAGAAGGATCAGCCAGCTTGAAGATTCCAAGGAATTGACCCTAGGATTGAGCAAGCGAGCCGATATGAGAGCTGGCAACATTTTGATGAGTGCAGGGATTCGAACAAACATGAGGAAAAGAATAGGAGCTGTCCCTGGGGTTGAGATTGGGGACATTTTCTTTTTCCGACTAGAATTATGTATCGTGGGTCTCCATAGTCAGTCGATGGGTGGGATTGACTACACAAATATGGGCGCTAAAAATGAGTCTGATCCTGTGGCTTTAGCCATTGTTTCCTCCGGAAAATATAATGACAATACAGAGGAAAGTGATATTTTGATCTATAGTGGTCAGGGTGGGGATAAGGGGGATGATCAAAAGCTAGAAAGGGGTAATCTTGCTTTGGATAGAAGCTTGCGACAGAAGAATGATGTCAGAGTAATACGGGGCATGAAAGATCAAATGAGCTCAACTTCAAAGGTCTATATCTATGATGGGCTTTATAAGATCCAGGATTCATGGGTAGAAAAAGGGAAATCTGGTGGTGGGGTATTCAAGTACAAGTTGGTGAGAGTTCCTGGACAACCCAGAGCCTTTGCTGCTTGGAAATCTATTGAAAGGTGGAAGGCTGGCATTGCTTCTAGGACTGGGCTCATTCTTGCAGACCTCTCCTCAGGAGCTGAAAAAATTCCCGTTTCACTTGTCAATGATGTTGATGATGAGAAAGCACCTGGTTATTTCACTTATCTCCATTCTCTTAGATATTCAAAATCCTTCATTGTTTCAAATCCCTATGATTGCTGCAACTGTCAAAAAGATTGCATTCCTGGCGATTTAAACTGTTCTTGCATCCGGAGGAACGAAGGTGATTTTCCATATACAGGGAATGGCATTTTAGTGAGTCGGAAGAAATTGGTTCATGAATGTGGCCCTTCATGTCAATGTTTTCCTAACTGCAAAAAGCGTGTATCCCAAACTGGGTTAAAGTACCGCATGGAAGTATTCAAAACAAAGGATAGAGGATGGGGCCTCCGAACATTGGATCCTATTCGTGCCGGTACCTTTATTTGTGAGTATGCAGGAGAAGTTATTGACAGAGCCAAGGTGAGTTGGAATGGAAATAATGATGAGTATGTTTTTGACACAACTCGAATTTATCATCCATTCAAGTGGAACTATGAACCCAAGTTATTTGAAGAAGCTGGTTTAAATGATTCTAGTGAGGATTATAATATCCCATCTCCTCTAATTATTAGTGCCAAGAATGTTGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTCTTTTGGCAGCCGGTTTCATATGAAGAAAACAGTCAAACTGTTGTGCACATTTCCTTTTTTGCTCTTAGACACATTCCTCCACTGACAGAATTGACATATGATTATGGGATTACCCGTTCTGATTCTACTGTGAGTCAAAGTACTCCCAGATGGAAAAAGAAATGCTTATGTGGATCATCAAAATGCCGGGGTTCTTTTGGTTGA 1947 0.4191 MQGGSGQNSGSIDKTRVLDVKPLRTLEPVFPNSGQATSFDGACPTGFYSFFPFGASQGPQASPPRVPMPTPLRSFRSSDTGEAEFPGASNGENTDSHAAPNKSKSSKKKPKISQDLQVDVSSLLGIGKNEREDGNRELVILLLMTFDGLRRRISQLEDSKELTLGLSKRADMRAGNILMSAGIRTNMRKRIGAVPGVEIGDIFFFRLELCIVGLHSQSMGGIDYTNMGAKNESDPVALAIVSSGKYNDNTEESDILIYSGQGGDKGDDQKLERGNLALDRSLRQKNDVRVIRGMKDQMSSTSKVYIYDGLYKIQDSWVEKGKSGGGVFKYKLVRVPGQPRAFAAWKSIERWKAGIASRTGLILADLSSGAEKIPVSLVNDVDDEKAPGYFTYLHSLRYSKSFIVSNPYDCCNCQKDCIPGDLNCSCIRRNEGDFPYTGNGILVSRKKLVHECGPSCQCFPNCKKRVSQTGLKYRMEVFKTKDRGWGLRTLDPIRAGTFICEYAGEVIDRAKVSWNGNNDEYVFDTTRIYHPFKWNYEPKLFEEAGLNDSSEDYNIPSPLIISAKNVGNVARFMNHSCSPNVFWQPVSYEENSQTVVHISFFALRHIPPLTELTYDYGITRSDSTVSQSTPRWKKKCLCGSSKCRGSFG 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01716 648 SUPERFAMILY PUA domain-like 174 356 IPR015947 -
Accr13g01716 648 ProSiteProfiles Post-SET domain profile. 632 648 IPR003616 -
Accr13g01716 648 SMART G9a_1 187 338 IPR003105 -
Accr13g01716 648 Pfam SAD/SRA domain 191 338 IPR003105 -
Accr13g01716 648 Gene3D - 175 354 IPR036987 -
Accr13g01716 648 ProSiteProfiles YDG domain profile. 192 334 IPR003105 -
Accr13g01716 648 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 55 648 IPR025794 GO:0016571
Accr13g01716 648 ProSiteProfiles Pre-SET domain profile. 409 470 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Accr13g01716 648 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 76 642 - -
Accr13g01716 648 SMART preset_2 363 457 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Accr13g01716 648 SUPERFAMILY SET domain 373 645 IPR046341 -
Accr13g01716 648 SMART set_7 473 623 IPR001214 GO:0005515
Accr13g01716 648 Pfam Pre-SET motif 367 465 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Accr13g01716 648 MobiDBLite consensus disorder prediction 54 114 - -
Accr13g01716 648 ProSiteProfiles SET domain profile. 473 617 IPR001214 GO:0005515
Accr13g01716 648 Gene3D SET domain 355 647 IPR046341 -
Accr13g01716 648 MobiDBLite consensus disorder prediction 73 100 - -
Accr13g01716 648 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 175 353 - -
Accr13g01716 648 Pfam SET domain 484 617 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01716 Accr-Chr13 32865733 32867679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01716 1 648 Su(var)3-9 homologs AT1G73100 52.409 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Accr13g01716 SAD_SRA 2.6e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01716 K24405 - gmx:100812173 842.802