Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01702 ATGGGCGACGACAATTGGTGCAGTGATGACGAATGCAATTATTACTACGATCAGAATTGCGATGAGGTCTTCGAAGTTGACGACGGCGCTGGCATTGATTCAGTCATGGCTGGTTATAAGCGTCCTACAACGCAGGTGATTTCAAGAGAATCACTTGTCGCTGCGCAGAAACAAGATCTGCGCCGAGTAATGGAGATGCTTTCACTGAGAGAGCATCACGCTCGTACCCTTCTTATTCATCATCGTTGGGATGTGCAGAATCTTTTCGCAGTATATGTAGAAAAGGGAAAAGTCGCCTTGTTCGCTGATGCCGGTGTTACTGTATATACCAATTCAGAACTATCGTCATCACTTCAATCTTTATCACTTCAATCTTCTTCCAGTGTTTTTTGTGAAATCTGCATAGAGAATATTCCAAGTCATCAAGTAACAAGAATGGAGTGTGGTCACTATTTCTGCAACCAATGTTGGACATCTCACTTTATTGTTCAGATCAACGAAGGCAAAAGTAAGCGAATCCTTTGTATGGCTCATAAATGCAACGCAATTTGTGATGAAAATATTGTGAGAGATCTTGTTCGTAAAAAGCATGCGGAGACGGTAGAGAAATTTGACCGGTTTCTTCTTGAATCTTACATTGAAGACAACAGGAGAGCCAAGTGGTGCCCTAGCGTTCCTCATTGTGGCAATGCAATCCGGGTTGAGGAAGAAGTATGTGAGGTTGAATGTTGCTGCGGCTTACAATTTTGTTTCAAGTGCTTGTCGGAGATTCATTCGCCGTGTTCTTGTCAGATGTTTGAACTATGGGCTAACAAGTGTAGAGATGAATCAGAAAGTGTGAACTGGATCACGGCCCACACCAAGCCTTGCCCTAAATGCCACAAACCGGTGGAGAAGAGCGGTGGCTGTAACTTGGTTAGCTGTATCTGTCGCCAATCATTTTGTTGGATATGCGGAGAAGCCACCGGCCGAGATCATACGTGGACAGCCATAACAGGCCATAGCTGTGGCCGTTACCAGCCACGAGAGAAACTCGCAGAACTTGCCAAGAAAAATCTGTATCGTTACATGCATTATCATAACCGATACAAAGCCCACATGGACTCTTTGAACCTTGAAGGTAAGTTGAAAGAGACAATGCAACAGAAGGTTTCTCTTTCAGAAAAGAAGCATGATTCTAGTATTAGAGATTATAGCTGGGTCAATAATGGGCTCTCGAGACTCTTCAGATCGAGGCGCGTGCTTTGTTATACGTATCCATTTGCGTATTATATGTTTGGAGGCGAGTTCTTTAATGATGATACGATTCCAAAAAAGGAAAGAGAAAGGAAGCAGAACTTGTTTGAGGATCAGCAGCAGCAACTGGAAGCGAATATCGAGAGACTCTCCATGTTTCTTGAGGAACCGTTTGATGAGTTTAAAGATGATAAAGTGATAAAAATTAGGGAGAAAGTCCTTAACCTATCCGCCGTTGTTGACAGTTTGTGCAGTAAAATGTATGAAGTCATTGAGAACGACTTGTTGGTTTCTCAAACGATTGCTCCTTACAAATCAAAGGGCATAGAAAAGGCATCTCTTCTTAATTCATAA 1590 0.427 MGDDNWCSDDECNYYYDQNCDEVFEVDDGAGIDSVMAGYKRPTTQVISRESLVAAQKQDLRRVMEMLSLREHHARTLLIHHRWDVQNLFAVYVEKGKVALFADAGVTVYTNSELSSSLQSLSLQSSSSVFCEICIENIPSHQVTRMECGHYFCNQCWTSHFIVQINEGKSKRILCMAHKCNAICDENIVRDLVRKKHAETVEKFDRFLLESYIEDNRRAKWCPSVPHCGNAIRVEEEVCEVECCCGLQFCFKCLSEIHSPCSCQMFELWANKCRDESESVNWITAHTKPCPKCHKPVEKSGGCNLVSCICRQSFCWICGEATGRDHTWTAITGHSCGRYQPREKLAELAKKNLYRYMHYHNRYKAHMDSLNLEGKLKETMQQKVSLSEKKHDSSIRDYSWVNNGLSRLFRSRRVLCYTYPFAYYMFGGEFFNDDTIPKKERERKQNLFEDQQQQLEANIERLSMFLEEPFDEFKDDKVIKIREKVLNLSAVVDSLCSKMYEVIENDLLVSQTIAPYKSKGIEKASLLNS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01702 529 Gene3D - 259 508 - -
Accr13g01702 529 ProSiteProfiles Zinc finger RING-type profile. 131 179 IPR001841 -
Accr13g01702 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 217 IPR013083 -
Accr13g01702 529 ProSiteProfiles TRIAD supradomain profile. 127 340 IPR044066 -
Accr13g01702 529 Coils Coil 438 458 - -
Accr13g01702 529 CDD Rcat_RBR_ARI1-like 284 337 - -
Accr13g01702 529 SUPERFAMILY RING/U-box 282 324 - -
Accr13g01702 529 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 51 402 IPR031127 GO:0004842|GO:0016567
Accr13g01702 529 FunFam RBR-type E3 ubiquitin transferase 125 216 - -
Accr13g01702 529 FunFam RBR-type E3 ubiquitin transferase 259 508 - -
Accr13g01702 529 CDD RING-HC_RBR_TRIAD1 129 182 - -
Accr13g01702 529 Pfam IBR domain, a half RING-finger domain 202 263 IPR002867 GO:0008270
Accr13g01702 529 SMART ibrneu5 202 263 IPR002867 GO:0008270
Accr13g01702 529 SMART ibrneu5 271 336 IPR002867 GO:0008270
Accr13g01702 529 SUPERFAMILY RING/U-box 202 269 - -
Accr13g01702 529 SUPERFAMILY RING/U-box 126 214 - -
Accr13g01702 529 Pfam Ariadne domain 342 527 IPR045840 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01702 Accr-Chr13 32454070 32455659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01702 64 525 ARIADNE family AT2G16090 67.164 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01702 K11968 - pcin:129295375 759.985