Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01571 ATGGCATCATTCATTGTTAGGCTATTCTTCTCACTCACCTTTATTTCTTCTCTTTTCTCAATATCATCATCATCTTCTTCTTCGAGAACATCATCTTTGTCTATAGACTTTTGGTGCAACCAAACTCCTCATCCTGAACTATGCAAATACCACATGAGCAACAAGCACCACTGGTTCAGACCGAACCACCGGTCCGAGTACAAAAAAATGCTGGTTCAGTTAGCCATGGAACAAGCTCAAGCTATGCATAAAGAAGCACAAGAATATGGCCCAAAATTTGTGACTTTAACGCAAAAATGTGTGTTCAATGATTGTTTAAAGCTCTACGATAACACCATCTTCCATCTAAACCAAACCCTTCAAACCCTACATACTTCTTCTTCCTCCTTATTAGATGTACAAACATGGCTCAGTACGGCCCTCACAAACATCGAAACCTGCCATAGCACTGTGTCGCAGCTCGGAGTTGGAGAATTCACAGCTCAAAATAATGCAAGCCACAAAGTTAGAAAGATGATAAGCAATGTGTTAGCCGTGAACGGTGAGATTATGAAGCAAGAGAATTATAACACAGAGAGAAAAGCACGTGGGTTTCCAAGTTGGTTTTCTGGGAAGCACAGGAGGTTGTTGAGCTTGAGTTCATCTTCTTTGAAGGCAAATATTGTGGTGGCTCAAGATGGTACAGGCCATTTTAATACGGTGCAAGCTGCCATTGATGAAGCTTCAACGAGAACAGTGAAGACGAGGTTTGTTATACGAGTGAAGAAAGGGATTTATGAAGAAAATATTCAAGTTGATAAGGAAAATGAAAATCTCATGATTGTTGGTGATGGAATGAACCTTACCATTATAACTGGTAATAGAAGCGTTAAAGATGGAATTACCCCCTCTATGTCTGCAACAGCAGGTATAGATGGCGCTCACTTCATTGCAAGAGATATAACTTTTAGAAACACGGCCGGTCCAGAGAAAGGTCAAGCCGTGGCGCTCCGATCAGCGTCCGACCTCTCAGTCTTCTACCGATGCTCCATTGAAGGCTATCAAGACACACTTATGGCTCATGCGCAACGTCAATTCTATAGAGACTGTAGAATTTTTGGCACAGTGGATTTCATTTGGGGTAATGCCGCGGTAGTCCTACAAAACTGCACCATTCTCGTAAGAAAGCCCTTACAAGGACAAGCAAGCATGATCACGGCTCAAGGACGAGATGACCCATTTCAGAACACCGGAATATCTATAATCAACTCTCAAATTCGAGCTGCGCCGGATCTCAGACAAGCGGTAAAGGCGTACGAAACCTATTTGGGTCGGCCATGGAAGAAATATGCACGGGTGGTTGTCATGAAAAGCTACATTGAAGGGTTGGTGAATCCATTGGGCTGGTCTCGATGGCATGATAGTGATTTTGCTCAAGATACGTTGTATTTTGGGGAATATATGAACTATGGAAATGGTTCTTCAACAAAAGATAGGGTTCAATGGCCTGGTTTTCATGTCTTGACGAGACAGAATGATACACAACAGTTTACTGTTGCTGGACTTCTTGCTGGTGACACATGGTTGCCTGAAACCGGTGTGCCTTTCGATGTTGTTATCTAA 1602 0.4263 MASFIVRLFFSLTFISSLFSISSSSSSSRTSSLSIDFWCNQTPHPELCKYHMSNKHHWFRPNHRSEYKKMLVQLAMEQAQAMHKEAQEYGPKFVTLTQKCVFNDCLKLYDNTIFHLNQTLQTLHTSSSSLLDVQTWLSTALTNIETCHSTVSQLGVGEFTAQNNASHKVRKMISNVLAVNGEIMKQENYNTERKARGFPSWFSGKHRRLLSLSSSSLKANIVVAQDGTGHFNTVQAAIDEASTRTVKTRFVIRVKKGIYEENIQVDKENENLMIVGDGMNLTIITGNRSVKDGITPSMSATAGIDGAHFIARDITFRNTAGPEKGQAVALRSASDLSVFYRCSIEGYQDTLMAHAQRQFYRDCRIFGTVDFIWGNAAVVLQNCTILVRKPLQGQASMITAQGRDDPFQNTGISIINSQIRAAPDLRQAVKAYETYLGRPWKKYARVVVMKSYIEGLVNPLGWSRWHDSDFAQDTLYFGEYMNYGNGSSTKDRVQWPGFHVLTRQNDTQQFTVAGLLAGDTWLPETGVPFDVVI 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01571 533 PANTHER PECTINESTERASE 15 523 - -
Accr13g01571 533 Pfam Plant invertase/pectin methylesterase inhibitor 35 178 IPR006501 GO:0004857
Accr13g01571 533 SUPERFAMILY Pectin lyase-like 216 530 IPR011050 -
Accr13g01571 533 Gene3D - 217 533 IPR012334 -
Accr13g01571 533 CDD PMEI-like_3 38 185 - -
Accr13g01571 533 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 182 IPR035513 -
Accr13g01571 533 FunFam Pectinesterase 214 533 - -
Accr13g01571 533 SMART PMEI_2 30 179 IPR006501 GO:0004857
Accr13g01571 533 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 183 IPR035513 -
Accr13g01571 533 NCBIfam pectinesterase inhibitor domain 10 179 IPR006501 GO:0004857
Accr13g01571 533 Pfam Pectinesterase 220 519 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01571 Accr-Chr13 27417452 27419868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01571 38 529 Carbohydrate Esterase AT5G51490 54.600 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01571 K01051 - gmx:100807908 616.305